BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36060.1
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473706 jgi|Araly1|473706|fgenesh2_kg.1__3660__AT1G36060.1 1605 0.0
> Ahg473706 jgi|Araly1|473706|fgenesh2_kg.1__3660__AT1G36060.1
Length=1771
Score = 1605 bits (869), Expect = 0.0
Identities = 1095/1202 (91%), Gaps = 23/1202 (2%)
Strand=Plus/Plus
Query 629 ttttttgtagtacatttttttttGTATTTCAGGAAACTCCGATGGCGGATCTCTTCGGTG 688
|||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 591 TTTTTTGTAGTATATTTTTTTTTGTATTTCAGGGAACTCCGATGGCGGATTTCTTCGGCG 650
Query 689 GTGGCCACGGCGGCGAGCTTATGGAAGCACTTCAACCTTTTTACAAAAGTGCTTCCACGT 748
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GTGGCCATGGCGGCGAGCTTATGGAAGCACTTCAACCTTTTTACAAAAGTGCTTCCACGT 710
Query 749 CTGCTTCAAATCCTGCGTTTGCGTCCTCAAACGATGCGTTTGCGTCTGCCCCAAACGACC 808
|||| ||| || |||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 711 CTGCCTCAGATTCTGCGTTTGCGTCCCCAAACGATGCGTTTGCGTCTGCGCCAAACGACC 770
Query 809 TATTTTCTTCTTCTTCTTACTATAATCCTCATGCATCTTTATTCCCTTCACATTCCACAA 868
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 771 CATTTTCTTCTTCCTCTTACTATAATCCTCATGCATCTTTCTTCCCTTCACATTCCACAA 830
Query 869 CCTCTTACCCGGATATTTATTCTGGATCCATGACCTATCCATCTTCATTCGGGTCGGATC 928
|| ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 831 CCCCTTACCCGGATCTTTATTCCGGATCCATGACCTATCCATC---ATTCGGGTCGGATC 887
Query 929 TTCAACAACCCGAAAACTACCAATCTCAGTTCCATTACCAAAACACTATCACTTACACTC 988
|||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||
Sbjct 888 TTCAACAACCCGAAAACTACTAGTCTCAGTTCCATTACCAAAACAATATCACTTACTCTC 947
Query 989 ACCAAGACAACAACACTTGCATGCTTAACTTCATTGAGCCGAGCCAACCGGGTTTTATGA 1048
| ||||| || | |||||| ||||| ||||| ||||| ||||||||||| |||||| | |
Sbjct 948 ATCAAGA-AA-A-CACTTGTATGCTAAACTTTATTGACCCGAGCCAACCAGGTTTTCTAA 1004
Query 1049 CCCAACCGGGTCCGAGT-TCGGGTTCGGTTTCAAAACCGGCTAAGCTCTATAGAGGAGTG 1107
||||||| |||||| | ||||||||||||||||| || || || |||||| ||||||||
Sbjct 1005 CCCAACCTGGTCCG-GCCTCGGGTTCGGTTTCAAAGCCCGCCAAACTCTATCGAGGAGTG 1063
Query 1108 AGGCAAAGACATTGGGGAAAATGGGTCGCGGAGATCCGTTTACCCAGGAACCGAACCCGA 1167
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 AGGCAAAGGCACTGGGGAAAATGGGTCGCGGAGATCCGTTTACCCAGGAACCGAACCCGA 1123
Query 1168 CTTTGGCTCGGAACATTCGACACGGCTGAAGAAGCCGCGTTGGCTTATGATCGCGCCGCG 1227
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CTCTGGCTAGGAACATTCGACACGGCTGAAGAAGCCGCGTTGGCTTATGATCGCGCCGCG 1183
Query 1228 TTTAAGCTTCGTGGTGACTCGGCTCGGCTTAACTTCCCAGCTCTCCGATACCAAACCGGC 1287
|| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||
Sbjct 1184 TTCAAGCTTCGTGGTGACTCGGCTCGGCTTAATTTTCCAGCTCTCCGTTACCAAACTGGC 1243
Query 1288 TCGTCTCCGTCTGATACCGGCGAATATGGTCCTATTCAAGCTGCCGTAGACGCTAAACTA 1347
||||||||| ||| |||||||||| || ||||||||||||||||| ||||| || ||
Sbjct 1244 TCGTCTCCGGGGGATTCCGGCGAATACGGACCTATTCAAGCTGCCGTTGACGCCAAGCTG 1303
Query 1348 GAAGCCATATTAGCTGAGCCGAAGAATCAGCCGGGCAAAACGGAGAGGACGTCGAGGAAA 1407
|||||||||||||| |||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1304 GAAGCCATATTAGCCGAGCCGAAGAATCAGCCGGGCAAAACAGAGAGGCCATCGAGGAAA 1363
Query 1408 CGAGCTAAAGCCGCGGCTTCTTCAGCTGAGCAGCCGTCAGCGCCACAACAACATTCCGGG 1467
||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1364 CGAGCTAGAGCCGCGGCTTCTTCGGCTGAGCAGCCGGCAGCGCCACAACAACATTCCGGG 1423
Query 1468 TCGGGTGAAAGTGATGGGTCGGGTTCACCGACTTCGGATGTTATGGTGCAGGAGATGTGC 1527
|| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1424 TCCGGTGAAAGTGACGGGTCGGGTTCGCCGACGTCGGATGTTATGGTGCAGGAGATGTGC 1483
Query 1528 CAAGAGCCAGAGATGCCATGGAATGAAAATTTCATGCTCGGCAAGTGTCCTTCTTATGAG 1587
||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1484 GAAGAGCCGGAGATGCCTTGGAATGAAAATTTCATGCTTGGCAAGTGTCCTTCTTATGAG 1543
Query 1588 ATAGATTGGGCTTCAATTTTATCGTGAAAAATTAGGATTCAATTCATTTTTATTCATTTT 1647
|| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||
Sbjct 1544 ATCGATTGGGCTTCAATTTTATCATGAAAAATTAGGATTCTATTCATTTTTATTTATTTT 1603
Query 1648 AACTTGTTTGTATTTTCTTTTAAACTTTAGGGTTATTAGCTGTGCGTAAAATTTGTAATT 1707
|| || | || || || || ||| || | |||||||| ||||||||||||||
Sbjct 1604 AA-TTCAAT--ATGTT-TTGTA---TTT----TT-T-AGCTGTGCTTAAAATTTGTAATT 1650
Query 1708 TAGCATTTTGTATGAATGTAATGCAAGTGTGTAAATTATGGACAGCTCAAGCTTTTTTGT 1767
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1651 TAGCATTTTGTATGAATGTAATGCAAGTGTGTAAATTATGGACAGCTTAAGCTTTTTTGT 1710
Query 1768 TCATGCCGTACCATGTAGACC-CTTCTTCTTTTCTCTTAATTGAAATGAATATGGTTAGT 1826
||||||||||| ||||||| | || ||||||||||||||||| |||||||| ||||||||
Sbjct 1711 TCATGCCGTACTATGTAGATCTCT-CTTCTTTTCTCTTAATTAAAATGAATTTGGTTAGT 1769
Query 1827 AT 1828
||
Sbjct 1770 AT 1771
Score = 857 bits (464), Expect = 0.0
Identities = 557/599 (93%), Gaps = 18/599 (3%)
Strand=Plus/Plus
Query 1 AAGGTGAGGTTGAGAGCATCTTCCAAAagagagagtgtttgtgtgtgtgagagagagtga 60
||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1 AAGGTGAGGTTGAGAGCATCTTCCAAAAGAGAGAGAG--AGTGTGTGT--GAGAGAGTGA 56
Query 61 gtgtgagtgagagaAGaaaaaaaaa-aTTGAGAGATTAAAATTTGAGTGAAATTAGGGTT 119
||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 57 GTGTGGGTGAGAGAA-AAAAAAAAAGATTGAGAGATTAAAATTTGAGTGAAATTAGGGTT 115
Query 120 TAT-TCTCTTCTTGCTTTCTTTGCTTCGTTTCATCTTCAAACCAAAAGaaaaaaaCTCTT 178
||| |||||||||| |||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 116 TATCTCTCTTCTTGTTTTCTTTGCTTCGTTTCATCTTCAAACCAAAA-ATAGAAACTCTT 174
Query 179 CCATGTCCTGTCTATTCATCAGTCGTCTTTCTTGAGAAAACACAAATCACGATTTTCTTA 238
|| |||||||| || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 175 CCCTGTCCTGTTTAATCATCTGTTGTCTTTCTTGAGAAAACACAAATCACGATTTTCTTA 234
Query 239 TGAAGTGTTGCTTTATGAGTTTATATTTTGCCAAAACTCATCTAAAACGACAAACTTTTG 298
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGACGTGTTGCTTTACGAGTTTATATTTTGCCAAAACTCATCTAAAACGACAAACTTTTG 294
Query 299 TTTAAAA-TTGTATTTGAAAAGTGTTTTCAAGAAAACGATATCCATCAAAAATATTATGA 357
||||||| ||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 295 TTTAAAATTTGTATTTG-AAAGTGGTTTCAAGAAAACGAGATCCATCAAAAATATTATGA 353
Query 358 TTTTTTCTGTCAATTAATATTC-----TTTCATTCTTTTATAGAGTTGATCAACTTCATG 412
||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 354 ATTTTTCTGTCAATTAATATTCTTTAATTTTATTCTTTTACAGAGTTGATCAACTTCATG 413
Query 413 GGCAttttttagttccctcaagttttgatcctcttatttta-tttctttttttgttgata 471
||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |||||||
Sbjct 414 GGCATTTTTTAGTTCCCTCAAGTTTTGATCCTCTT-TTTTAATTTATTTTTT-GTTGATA 471
Query 472 aatttattttagttttgATCTATGGAGGTTGCTTATTTCAAACCTCGTTGATCACTTTTA 531
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 AATTTGTTTTAGTTTTGATCTATGGAGGTTGCTTATTTCAAACCTCGTTGATCAATTTTA 531
Query 532 TTTCTGTATAAACCAAAAAACCAGTCtttgaattttttctaaaaagacaggttttattt 590
|||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTCTGTAAAAAACTAAAAACCAGTCTTTGAATTTTTTCTAAAAAGACAGGTTTTATTT 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68943343450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5