BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36070.1
Length=1908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827 1908 0.0
Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749 350 3e-95
> Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827
Length=1200
Score = 1908 bits (1033), Expect = 0.0
Identities = 1148/1204 (95%), Gaps = 5/1204 (0%)
Strand=Plus/Plus
Query 453 ATGGAGACTGATACATCAGCTCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAG 512
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGAGACTGATACATCAGCTCAAGAGGCAAGAAATGGTAAAGACATTCAAGGGATTCAG 60
Query 513 TGGGAAGGGTTTAAGTATAATAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAT 572
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGGAAGGGTTTAAGTATACTAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAG 120
Query 573 AACTTTGTTAATATCTTAAGGCCTAGCTCTCGAGAAAAGCTTGATAAGGAACATGGGCAA 632
|||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| |
Sbjct 121 AACTTTGTCAATATCTTAACGCCTAGCTCTCGGGAAAAGCTCGATAAGGAACATCGGC-A 179
Query 633 GTAGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCC 692
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 180 --AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAGTTCAATACAAGGCTTGTCACATCC 237
Query 693 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATAT 752
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 238 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCAAAGCATGATGTATAT 297
Query 753 CTAATGCAAAATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGGAAAGAAGTA 812
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 298 CTAATGCAAAATTATTCACTCATGTACTGGTCATCTCTTCTACAGAGAGGGAAAGAAGTA 357
Query 813 CTTAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 872
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 417
Query 873 CTCTCTAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTAGGAGGG 932
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 418 CTCTCCAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTGTTAGGAGGG 477
Query 933 TTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATCAGCCTGGGGTTGCTTTTTGCACAAGA 992
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 TTCAACGGGGAGCTTCTCTGCAAGTGTGTAAACCAGCCTGGGGTTGCTTTTTGCACAAGA 537
Query 993 TTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCG-AGACCCAAGTGG 1051
|| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 538 TTGTCAACAGAAGATAATGCCATCACAAACACAGTTGATATATACCGAAG-CCCAAGTGG 596
Query 1052 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGTGTATTCGATGCTCAGAG 1111
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGGGTATTCGATGCTCAGAG 656
Query 1112 CTTTACACGTGTCAGTGAATTTGCTTTAGATTGGTCTGTCAATAATACCTCAGTTAGCCC 1171
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 657 CTTTACACGTGTCAGTGAATTTGCTTTCGATTGGTCTGTCAATAATACCTCAGTTAGCCC 716
Query 1172 GGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCTTGATCTCTGATTCCCA 1231
||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 717 AGATGGAAAGCTACTCGCTGTACTCGGGGATAGTACAGAATGCTTGATCTCTGATTCCCA 776
Query 1232 TTCTGGAAAAGTTATTTCAAGCCTCAGAGGCCACAAAGACTACTCATTTGCATCTGCTTG 1291
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 777 TTCTGGAAAAGTTATTTCAACCCTCAAAGGCCACAAAGACTACTCGTTTGCATCTGCTTG 836
Query 1292 GCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGACACGGCATGCCGTCTCTGGGA 1351
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 837 GCACCCGAATGGTCTAATCTTAGCAACTGGAAACCAAGACACGACATGCCGTCTCTGGGA 896
Query 1352 CATTCGTAACCCGTCAGAATCATTCGCTGTCCTGAAAGGAAACATGGGAGCCATCAGAGG 1411
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 897 CATTCGGAACCCATCAGAATCATTCGCCATCCTGAAAGGAAACATGGGAGCCATCAGAGG 956
Query 1412 ACTGAAGTTCACACCAGAAGGGCGGTTTCTTGCAATGGCTGAGCCTGCAGACTTTGTTCA 1471
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 957 ACTGAAGTTCACACCAGAAGGACGGTTTCTTGCCATGGCTGAGCCTGCAGACTTTGTTCA 1016
Query 1472 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1076
Query 1532 AGCCGGGATCTCGTTCAGCCCCGATACAGAGGCACTATATGTAGGGGTCGCAGACCGCAC 1591
||| |||||||| || |||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 1077 AGCTGGGATCTCATTTAGCCCCGACACAGAGGCACTATATGTTGGGATCGCAGACCGCAC 1136
Query 1592 TTATGGAAGTTTGCTGGAGTATAAGAGGAGAAAGGATAATCACTATATGGACTCCTTTTA 1651
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1137 CTATGGAAGCTTGATGGAGTATAAGAGGAGAAAAGATAATCACTATATGGACTCCTTTTT 1196
Query 1652 CTGA 1655
||||
Sbjct 1197 CTGA 1200
> Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749
Length=1350
Score = 350 bits (189), Expect = 3e-95
Identities = 878/1200 (73%), Gaps = 89/1200 (7%)
Strand=Plus/Plus
Query 461 TGATACATCAGC-TCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAGTGGGAAG 519
|||||||||||| | ||| || |||||||| ||||| || |||||||||| |||| ||
Sbjct 165 TGATACATCAGCGT-TAGAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCTTGGG-AG 222
Query 520 -GGTTTAAGTATAATAGAGACGAG-TTTCGTGAG-ACTAGGTTGAAACAATATGATAACT 576
| | || || | || || || | |||||| || || ||| ||| ||| | ||||
Sbjct 223 AGCATGAATTACACGAGGGA-TAGATACCGTGAGAAC-AGATTGCTACACTATAAAAACT 280
Query 577 TTGTTAATATCTTAAGGCCTAGCTCTC-GAGAAAAGCTTGATAAGGAACATGGGCAAG-T 634
||| | | |||| ||| || | ||||| |||||||||||| || || |
Sbjct 281 TTGAGAGTCTCTT------TAGATC-CAGAGAAGAGCTTGATAAGG---AT-TGCTTGCA 329
Query 635 AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCCAC 694
||||||||||||||| |||||||||||||| || ||||| || |||||||||| |||||
Sbjct 330 AGTTGAGAAAGGAAAAAACTTTTATGACTTTCAGTTCAACACGAGGCTTGTCAAGTCCAC 389
Query 695 TATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATATCT 754
|||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| ||| |
Sbjct 390 AATTGCACATTTTCAGCTGAGGAACTTGGTATGGGCAACATCAAAGCACGATGTGTATTT 449
Query 755 AATGCAA-AATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGG-AAAGAAGTA 812
||| || || || || |||||||| ||||||||| | || || || ||| |||||||||
Sbjct 450 CATG-AACAACTACTCTCTCATGCATTGGTCATCTTTGCTGCAAAG-GGGCAAAGAAGTA 507
Query 813 CTTAATGTCGC-CAGATCAGTTACCCCCACTCA-GAAACTA-CCTGGATTGTTTTCTG-A 868
|| ||||| || || || || || || | ||| | | | ||||| ||| || | |
Sbjct 508 CTCAATGTGGCGAAGCCCA-TTGTTCCTAC-AATGAAGC-AGCATGGATCGTTGTC-GCA 563
Query 869 GCCACTCTCTAGGGTGCAAG-TTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTAG 927
| | | || || || | || | |||| ||||||||| ||||| || | || || |
Sbjct 564 GTCTGTATCAAGAGT-CCAGATAAGCACCATGGCAGTTAAAGACGATTTAATAGTTGCGG 622
Query 928 GAGGGTTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATC-AGCCTGGGGTTGCTTTTTGC 986
|||||||| | ||||| ||| |||||||| | | || | | |||| ||||||||| |||
Sbjct 623 GAGGGTTCCAAGGGGAACTTATCTGCAAGAGAATCAA-CGAACCTGAGGTTGCTTTCTGC 681
Query 987 ACAAGATTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCGA-GAC-C 1044
|||| | || || | | || || | |||||| || | ||||| ||||| | | | | |
Sbjct 682 ACAAAACTAACATCAGCTGAAAACGACATCACCAATTCGGTTGACATATA-CAACG-CAC 739
Query 1045 CAAGTGGCTCCCTT-AG-GCTTATAACCGCAAATAACGACTGTAAAATTCGTG-TATTCG 1101
| ||||||| | || || | | || |||| || || ||||||| | || | |||| |
Sbjct 740 CTAGTGGCT-CGTTAAGAG-TCATGGCCGCGAACAATGACTGTACTGTCCG-GCTATTTG 796
Query 1102 ATG-CTCAGAGCTTTACACGT-GTCAGTGAATTT--GCTTTAGATTGGTCTGTCAATAAT 1157
||| | || | |||| | | | ||| | ||| |||| ||||||||||| |||||
Sbjct 797 ATGCCACA-AACTTTGC-CTTCCTCA-ACAGTTTCACCTTT-GATTGGTCTGTAAATAAC 852
Query 1158 ACCT-CAGTTAGCCCGGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCTT 1216
| | || || || || || ||| || | ||||| | ||||||||| |||| |||||
Sbjct 853 ATTTCCA-CCAGTCCAGACGGCAAGTTAGTGGCTGTTCTAGGGGACAGTCCAGAGTGCTT 911
Query 1217 GATCT--CTGATTCC-CATTCTGGAAAAGTTATTTCA-AGCCTCAG-AGGCCA-CAAAGA 1270
| || | ||| || | ||||||||||| | | || | ||| | |||||| | |||
Sbjct 912 -A-CTAGCAGATACCGGA-TCTGGAAAAGTGA-TCCACGGACTC-GAAGGCCATC-TAGA 965
Query 1271 CTACTCATTTGCATCTGCTTGGCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGA 1330
|||||| ||| |||| || |||||||| || |||| |||| |||| ||||| || |||||
Sbjct 966 CTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCCTAGCCACGGGCAATCAAGA 1025
Query 1331 CACGGCATGCCGTCTCTGGGACATTCGTAACCCGTCAGAATCATTC--GCTGTCCTGAAA 1388
||| | || | || |||||||| | |||| ||| |||| || ||| |||||
Sbjct 1026 CACAACCTGTAGGCTATGGGACATAAGGAACCTGTCTCAATCCCTCAAATTGT--TGAAA 1083
Query 1389 GGAAACATGGGAGCCATCAGAGGAC-TGAAGTTCACACCAGAAGGGCGGTTTCTT-GCAA 1446
|||||||||||||||||| || | | ||| |||||| | || || ||| ||||| || |
Sbjct 1084 GGAAACATGGGAGCCATCCGA-GCCTTGAGGTTCACGTCTGATGGTCGG-TTCTTAGCCA 1141
Query 1447 TGGCTGAGCCTGCAGACTTTGTTCACATCTTCGACAC-GCAGTCCGGGTT--TCTACAGT 1503
|||||||||| ||||||||||| ||| | || || || | || | |||| || ||||
Sbjct 1142 TGGCTGAGCCAGCAGACTTTGTACACTTGTTTGATACGGAAG--CTGGTTACACT-CAGT 1198
Query 1504 CCCAAGAGATTGATCTGTTTGGAGAAATAGCCGGGA-TCTCGTTCAGCCCCGATACAGAG 1562
||||||||||||||||||||||||||||| |||| ||||||| ||||| || || |||
Sbjct 1199 GTCAAGAGATTGATCTGTTTGGAGAAATAGC-GGGAATCTCGTTTAGCCCTGACACGGAG 1257
Query 1563 GCACTATAT-GTAGGG-GTCGCAGACCGCACTTATGGAAGTTTGCTGGAGTATAAGAGGA 1620
||||| | | || ||| || || || || ||||| || || ||| |||||| ||| ||||
Sbjct 1258 GCACTGT-TCGT-GGGAGTAGCTGATCGTACTTACGGTAGCTTGTTGGAGTTTAACAGGA 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71685841090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5