BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G36070.1 Length=1908 Score E Sequences producing significant alignments: (Bits) Value Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827 1908 0.0 Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749 350 3e-95 > Ahg314047 jgi|Araly1|314047|fgenesh1_pm.C_scaffold_1002827 Length=1200 Score = 1908 bits (1033), Expect = 0.0 Identities = 1148/1204 (95%), Gaps = 5/1204 (0%) Strand=Plus/Plus Query 453 ATGGAGACTGATACATCAGCTCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAG 512 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1 ATGGAGACTGATACATCAGCTCAAGAGGCAAGAAATGGTAAAGACATTCAAGGGATTCAG 60 Query 513 TGGGAAGGGTTTAAGTATAATAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAT 572 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGGAAGGGTTTAAGTATACTAGAGACGAGTTTCGTGAGACTAGGTTGAAACAATATGAG 120 Query 573 AACTTTGTTAATATCTTAAGGCCTAGCTCTCGAGAAAAGCTTGATAAGGAACATGGGCAA 632 |||||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||| | Sbjct 121 AACTTTGTCAATATCTTAACGCCTAGCTCTCGGGAAAAGCTCGATAAGGAACATCGGC-A 179 Query 633 GTAGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCC 692 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 180 --AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAGTTCAATACAAGGCTTGTCACATCC 237 Query 693 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATAT 752 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 238 ACTATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCAAAGCATGATGTATAT 297 Query 753 CTAATGCAAAATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGGAAAGAAGTA 812 |||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| Sbjct 298 CTAATGCAAAATTATTCACTCATGTACTGGTCATCTCTTCTACAGAGAGGGAAAGAAGTA 357 Query 813 CTTAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 872 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ATGAATGTCGCCAGATCAGTTACCCCCACTCAGAAACTACCTGGATTGTTTTCTGAGCCA 417 Query 873 CTCTCTAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTAGGAGGG 932 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 418 CTCTCCAGGGTGCAAGTTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTGTTAGGAGGG 477 Query 933 TTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATCAGCCTGGGGTTGCTTTTTGCACAAGA 992 ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 478 TTCAACGGGGAGCTTCTCTGCAAGTGTGTAAACCAGCCTGGGGTTGCTTTTTGCACAAGA 537 Query 993 TTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCG-AGACCCAAGTGG 1051 || ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 538 TTGTCAACAGAAGATAATGCCATCACAAACACAGTTGATATATACCGAAG-CCCAAGTGG 596 Query 1052 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGTGTATTCGATGCTCAGAG 1111 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 597 CTCCCTTAGGCTTATAACCGCAAATAACGACTGTAAAATTCGGGTATTCGATGCTCAGAG 656 Query 1112 CTTTACACGTGTCAGTGAATTTGCTTTAGATTGGTCTGTCAATAATACCTCAGTTAGCCC 1171 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 657 CTTTACACGTGTCAGTGAATTTGCTTTCGATTGGTCTGTCAATAATACCTCAGTTAGCCC 716 Query 1172 GGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCTTGATCTCTGATTCCCA 1231 ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 717 AGATGGAAAGCTACTCGCTGTACTCGGGGATAGTACAGAATGCTTGATCTCTGATTCCCA 776 Query 1232 TTCTGGAAAAGTTATTTCAAGCCTCAGAGGCCACAAAGACTACTCATTTGCATCTGCTTG 1291 |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| Sbjct 777 TTCTGGAAAAGTTATTTCAACCCTCAAAGGCCACAAAGACTACTCGTTTGCATCTGCTTG 836 Query 1292 GCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGACACGGCATGCCGTCTCTGGGA 1351 ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 837 GCACCCGAATGGTCTAATCTTAGCAACTGGAAACCAAGACACGACATGCCGTCTCTGGGA 896 Query 1352 CATTCGTAACCCGTCAGAATCATTCGCTGTCCTGAAAGGAAACATGGGAGCCATCAGAGG 1411 |||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 897 CATTCGGAACCCATCAGAATCATTCGCCATCCTGAAAGGAAACATGGGAGCCATCAGAGG 956 Query 1412 ACTGAAGTTCACACCAGAAGGGCGGTTTCTTGCAATGGCTGAGCCTGCAGACTTTGTTCA 1471 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 957 ACTGAAGTTCACACCAGAAGGACGGTTTCTTGCCATGGCTGAGCCTGCAGACTTTGTTCA 1016 Query 1472 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CATCTTCGACACGCAGTCCGGGTTTCTACAGTCCCAAGAGATTGATCTGTTTGGAGAAAT 1076 Query 1532 AGCCGGGATCTCGTTCAGCCCCGATACAGAGGCACTATATGTAGGGGTCGCAGACCGCAC 1591 ||| |||||||| || |||||||| ||||||||||||||||| ||| ||||||||||||| Sbjct 1077 AGCTGGGATCTCATTTAGCCCCGACACAGAGGCACTATATGTTGGGATCGCAGACCGCAC 1136 Query 1592 TTATGGAAGTTTGCTGGAGTATAAGAGGAGAAAGGATAATCACTATATGGACTCCTTTTA 1651 |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1137 CTATGGAAGCTTGATGGAGTATAAGAGGAGAAAAGATAATCACTATATGGACTCCTTTTT 1196 Query 1652 CTGA 1655 |||| Sbjct 1197 CTGA 1200 > Ahg316716 jgi|Araly1|316716|fgenesh1_pm.C_scaffold_2001749 Length=1350 Score = 350 bits (189), Expect = 3e-95 Identities = 878/1200 (73%), Gaps = 89/1200 (7%) Strand=Plus/Plus Query 461 TGATACATCAGC-TCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAGTGGGAAG 519 |||||||||||| | ||| || |||||||| ||||| || |||||||||| |||| || Sbjct 165 TGATACATCAGCGT-TAGAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCTTGGG-AG 222 Query 520 -GGTTTAAGTATAATAGAGACGAG-TTTCGTGAG-ACTAGGTTGAAACAATATGATAACT 576 | | || || | || || || | |||||| || || ||| ||| ||| | |||| Sbjct 223 AGCATGAATTACACGAGGGA-TAGATACCGTGAGAAC-AGATTGCTACACTATAAAAACT 280 Query 577 TTGTTAATATCTTAAGGCCTAGCTCTC-GAGAAAAGCTTGATAAGGAACATGGGCAAG-T 634 ||| | | |||| ||| || | ||||| |||||||||||| || || | Sbjct 281 TTGAGAGTCTCTT------TAGATC-CAGAGAAGAGCTTGATAAGG---AT-TGCTTGCA 329 Query 635 AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCCAC 694 ||||||||||||||| |||||||||||||| || ||||| || |||||||||| ||||| Sbjct 330 AGTTGAGAAAGGAAAAAACTTTTATGACTTTCAGTTCAACACGAGGCTTGTCAAGTCCAC 389 Query 695 TATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATATCT 754 |||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| ||| | Sbjct 390 AATTGCACATTTTCAGCTGAGGAACTTGGTATGGGCAACATCAAAGCACGATGTGTATTT 449 Query 755 AATGCAA-AATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGG-AAAGAAGTA 812 ||| || || || || |||||||| ||||||||| | || || || ||| ||||||||| Sbjct 450 CATG-AACAACTACTCTCTCATGCATTGGTCATCTTTGCTGCAAAG-GGGCAAAGAAGTA 507 Query 813 CTTAATGTCGC-CAGATCAGTTACCCCCACTCA-GAAACTA-CCTGGATTGTTTTCTG-A 868 || ||||| || || || || || || | ||| | | | ||||| ||| || | | Sbjct 508 CTCAATGTGGCGAAGCCCA-TTGTTCCTAC-AATGAAGC-AGCATGGATCGTTGTC-GCA 563 Query 869 GCCACTCTCTAGGGTGCAAG-TTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTAG 927 | | | || || || | || | |||| ||||||||| ||||| || | || || | Sbjct 564 GTCTGTATCAAGAGT-CCAGATAAGCACCATGGCAGTTAAAGACGATTTAATAGTTGCGG 622 Query 928 GAGGGTTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATC-AGCCTGGGGTTGCTTTTTGC 986 |||||||| | ||||| ||| |||||||| | | || | | |||| ||||||||| ||| Sbjct 623 GAGGGTTCCAAGGGGAACTTATCTGCAAGAGAATCAA-CGAACCTGAGGTTGCTTTCTGC 681 Query 987 ACAAGATTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCGA-GAC-C 1044 |||| | || || | | || || | |||||| || | ||||| ||||| | | | | | Sbjct 682 ACAAAACTAACATCAGCTGAAAACGACATCACCAATTCGGTTGACATATA-CAACG-CAC 739 Query 1045 CAAGTGGCTCCCTT-AG-GCTTATAACCGCAAATAACGACTGTAAAATTCGTG-TATTCG 1101 | ||||||| | || || | | || |||| || || ||||||| | || | |||| | Sbjct 740 CTAGTGGCT-CGTTAAGAG-TCATGGCCGCGAACAATGACTGTACTGTCCG-GCTATTTG 796 Query 1102 ATG-CTCAGAGCTTTACACGT-GTCAGTGAATTT--GCTTTAGATTGGTCTGTCAATAAT 1157 ||| | || | |||| | | | ||| | ||| |||| ||||||||||| ||||| Sbjct 797 ATGCCACA-AACTTTGC-CTTCCTCA-ACAGTTTCACCTTT-GATTGGTCTGTAAATAAC 852 Query 1158 ACCT-CAGTTAGCCCGGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCTT 1216 | | || || || || || ||| || | ||||| | ||||||||| |||| ||||| Sbjct 853 ATTTCCA-CCAGTCCAGACGGCAAGTTAGTGGCTGTTCTAGGGGACAGTCCAGAGTGCTT 911 Query 1217 GATCT--CTGATTCC-CATTCTGGAAAAGTTATTTCA-AGCCTCAG-AGGCCA-CAAAGA 1270 | || | ||| || | ||||||||||| | | || | ||| | |||||| | ||| Sbjct 912 -A-CTAGCAGATACCGGA-TCTGGAAAAGTGA-TCCACGGACTC-GAAGGCCATC-TAGA 965 Query 1271 CTACTCATTTGCATCTGCTTGGCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGA 1330 |||||| ||| |||| || |||||||| || |||| |||| |||| ||||| || ||||| Sbjct 966 CTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCCTAGCCACGGGCAATCAAGA 1025 Query 1331 CACGGCATGCCGTCTCTGGGACATTCGTAACCCGTCAGAATCATTC--GCTGTCCTGAAA 1388 ||| | || | || |||||||| | |||| ||| |||| || ||| ||||| Sbjct 1026 CACAACCTGTAGGCTATGGGACATAAGGAACCTGTCTCAATCCCTCAAATTGT--TGAAA 1083 Query 1389 GGAAACATGGGAGCCATCAGAGGAC-TGAAGTTCACACCAGAAGGGCGGTTTCTT-GCAA 1446 |||||||||||||||||| || | | ||| |||||| | || || ||| ||||| || | Sbjct 1084 GGAAACATGGGAGCCATCCGA-GCCTTGAGGTTCACGTCTGATGGTCGG-TTCTTAGCCA 1141 Query 1447 TGGCTGAGCCTGCAGACTTTGTTCACATCTTCGACAC-GCAGTCCGGGTT--TCTACAGT 1503 |||||||||| ||||||||||| ||| | || || || | || | |||| || |||| Sbjct 1142 TGGCTGAGCCAGCAGACTTTGTACACTTGTTTGATACGGAAG--CTGGTTACACT-CAGT 1198 Query 1504 CCCAAGAGATTGATCTGTTTGGAGAAATAGCCGGGA-TCTCGTTCAGCCCCGATACAGAG 1562 ||||||||||||||||||||||||||||| |||| ||||||| ||||| || || ||| Sbjct 1199 GTCAAGAGATTGATCTGTTTGGAGAAATAGC-GGGAATCTCGTTTAGCCCTGACACGGAG 1257 Query 1563 GCACTATAT-GTAGGG-GTCGCAGACCGCACTTATGGAAGTTTGCTGGAGTATAAGAGGA 1620 ||||| | | || ||| || || || || ||||| || || ||| |||||| ||| |||| Sbjct 1258 GCACTGT-TCGT-GGGAGTAGCTGATCGTACTTACGGTAGCTTGTTGGAGTTTAACAGGA 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71685841090 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5