BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36078.1

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg921847 jgi|Araly1|921847|scaffold_103128.1                        187    5e-47
  Ahg948824 jgi|Araly1|948824|scaffold_800711.1                        137    6e-32


> Ahg921847 jgi|Araly1|921847|scaffold_103128.1
Length=248

 Score =  187 bits (101),  Expect = 5e-47
 Identities = 173/204 (85%), Gaps = 20/204 (10%)
 Strand=Plus/Plus

Query  47   ACCTTCGATCGAGCCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATT-G-T-T  103
            |||||||||||| ||| |||||||||||| |||||||||||||||||||||||| | | |
Sbjct  3    ACCTTCGATCGAACCTTCATGCCTCTCTTTCTTATGAAACTCGAATTGAAGATTCGTTCT  62

Query  104  C-TCATGGTCTCAACAAGCCTAAGTCTATTCAATGC-GACAACATCGCTCTAGAATGTGT  161
            | || |||||||||||||||||||| |||||||||| || ||| ||||||          
Sbjct  63   CTTCGTGGTCTCAACAAGCCTAAGTATATTCAATGCGGA-AACGTCGCTC----------  111

Query  162  ATAAAGGAAGGAAGAAGAAGACTATCAAGTATTTGGCCTGCAAGAGTGTCGACAAGTCGC  221
             |  ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct  112  -T--AGGAAGGAAGATGAAGACTATCGAGTATTTGGCCTGCAAGAGTGTCGACAAGTCGC  168

Query  222  AGAAAGAGAAAGTTTTTTCATGAG  245
            |||| ||| |||  ||||||||||
Sbjct  169  AGAA-GAGCAAGGGTTTTCATGAG  191


> Ahg948824 jgi|Araly1|948824|scaffold_800711.1
Length=598

 Score =  137 bits (74),  Expect = 6e-32
 Identities = 96/106 (91%), Gaps = 4/106 (4%)
 Strand=Plus/Plus

Query  50   TTCGATCGAGCCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATT-GTTCTCAT  108
            ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  71   TTCGATCGAACCTACATGCCTCTCTTGCTTATGAAACTCGAATTGAAGATTCGTTCTCTT  130

Query  109  -G-G-TCTCAACAAGCCTAAGTCTATTCAATGCGACAACATCGCTC  151
             | | ||||||||||||||||| |||| |||||| |||| ||||||
Sbjct  131  TGTGGTCTCAACAAGCCTAAGTGTATTGAATGCGGCAACGTCGCTC  176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16406903270


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5