BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36095.1

Length=906
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg948990 jgi|Araly1|948990|scaffold_800877.1                        217    1e-55
  Ahg331140 jgi|Araly1|331140|fgenesh1_pm.C_scaffold_8000483           156    3e-37


> Ahg948990 jgi|Araly1|948990|scaffold_800877.1
Length=685

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 242/300 (81%), Gaps = 18/300 (6%)
 Strand=Plus/Plus

Query  22   AAGAATCTTGATCCAGTCAAGAAATATGC-ACAGCCTGTGCCACTTAAACATGGTAGTTG  80
            ||||| |||||||||  |||||||||| | ||  | ||| || |||||||||||||||||
Sbjct  156  AAGAA-CTTGATCCAAACAAGAAATATTCAAC-TCATGTTCCTCTTAAACATGGTAGTTG  213

Query  81   GAGGTGTAACTATTGTCATAA-AGTCACAAATGGTGGAGTTAAAGGT-GCAAAACAGCAT  138
             | ||||| ||||||| | || ||||| |||| |||||||| || || | ||||| ||||
Sbjct  214  AATGTGTATCTATTGTAAAAACAGTCAAAAATTGTGGAGTTCAACGTAG-AAAACTGCAT  272

Query  139  ATTCTTGGAGGTTTTAGGAATGTTACTCAATGTTCTCTAGTTCCTCCTATTATGAG--GG  196
            ||| ||||||||||||||||||||||||||||||||||||||| |   || ||| |  ||
Sbjct  273  ATTGTTGGAGGTTTTAGGAATGTTACTCAATGTTCTCTAGTTC-TAG-ATCATGTGAAGG  330

Query  197  AAGAAAT-AAAAGATTCCATGCTTAAGAAAA-CTGAAA-TTAAAGCCACTACTCAAATGA  253
            ||||| | |||| ||| || | |||| |||  || ||| |||||| || |||||||| ||
Sbjct  331  AAGAAGTCAAAA-ATTTCAAGTTTAA-AAAGGCT-AAAGTTAAAGTCAGTACTCAAACGA  387

Query  254  TGCCACCCCCAGCCACTTCATATGACGATTATGGTGAA-GAAGAAGAAGCAGCTGAAGTT  312
            ||||||| |||||| ||| |||| | ||||||| | || || ||||||| |  |||||||
Sbjct  388  TGCCACCACCAGCCCCTTTATATTATGATTATGAT-AATGAGGAAGAAGAATTTGAAGTT  446


> Ahg331140 jgi|Araly1|331140|fgenesh1_pm.C_scaffold_8000483
Length=627

 Score =  156 bits (84),  Expect = 3e-37
 Identities = 174/216 (81%), Gaps = 12/216 (6%)
 Strand=Plus/Plus

Query  103  GTCACAAATGGTGGAGTTAAAGGTGCAAAACAGCATATTCTTGGAGGTTTTAGGAATGTT  162
            ||||||||| |||||||| || ||| ||||| ||||||| ||||| ||||||||||||||
Sbjct  73   GTCACAAATTGTGGAGTTCAACGTGGAAAACTGCATATTGTTGGAAGTTTTAGGAATGTT  132

Query  163  ACTCAATGTTCTCTAGTTCCTCCTATTATGAG--GGAAGAAAT-AAAAGATTCCATGCTT  219
            ||||||||||||||||||| |   || ||| |  ||||| | | |||| ||| || | ||
Sbjct  133  ACTCAATGTTCTCTAGTTC-TAG-ATCATGTGAAGGAAGTAGTCAAAA-ATTTCAGGTTT  189

Query  220  AAGAAAA-CTGAAA-TTAAAGCCACTACTCAAATGATGCCACCCCCAGCCACTTCATATG  277
            || |||  || ||| |||||| || |||| ||||||||||||| |||||| ||| |||| 
Sbjct  190  AA-AAAGGCT-AAAGTTAAAGTCAGTACTGAAATGATGCCACCACCAGCCCCTTTATATT  247

Query  278  ACGATTATGGTGAA-GAAGAAGAAGCAGCTGAAGTT  312
            | ||||||| | || || ||||||| |  |||||||
Sbjct  248  ATGATTATGAT-AATGAGGAAGAAGAATTTGAAGTT  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33586289877


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5