BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G36150.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg913470 jgi|Araly1|913470|Al_scaffold_0001_3724 856 0.0 Ahg922765 jgi|Araly1|922765|scaffold_104046.1 344 5e-94 > Ahg913470 jgi|Araly1|913470|Al_scaffold_0001_3724 Length=750 Score = 856 bits (463), Expect = 0.0 Identities = 683/782 (87%), Gaps = 43/782 (5%) Strand=Plus/Plus Query 1 ATGAAGCCATCCTTTGTTCTTCTATCTATTG-TACTATTACTCTCATCATCACTATCGGA 59 ||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| | Sbjct 1 ATGAAGCCATCTTTTGTTCTTCTATCTATTGCT-CTATTACTATCATCATCACTATCGCA 59 Query 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACC-GTCGATGGCTCCAACACCGCAACCAT 118 |||| ||||||||||||| |||||||| ||||| || |||| ||||||||||| |||||| Sbjct 60 TGCATCCGACTTTGGATCGCCGTCACACCCACCGGT-GATGTCTCCAACACCGGAACCAT 118 Query 119 CAAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAA 178 ||||||||| ||||||||| |||||||| ||||||||||| |||||||| |||||||||| Sbjct 119 CAAACTCCATCGACTGTTCTAGCGTCATCTACAGCATGGTGGATTGTCTATCCTTCTTAA 178 Query 179 CCGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTC 238 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 179 CCGTCGGATCAACTGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTC 238 Query 239 TT-AACTATAGCCCTAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGAAATGGGATTC 297 || || |||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 239 TTGAA-TATAACCCAAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGCAATGGGTTTC 297 Query 298 GTACTTGATGATACAAAAGCTCTTGCCATGCCTAAAATTTGCAACGT-CCCTATTGATCC 356 ||||| |||||||| |||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 298 GTACTAGATGATACCAAAGCTCTTGCCATGCCTAAAATTTGCAACGTTCCC-ATTGATCC 356 Query 357 TAATTGTGATGTATCTACTCCGGCTGCATCAACACCAGTTTCTCCACCGGTAGAGTCACC 416 | ||||||||||||||| ||||| |||| |||||||| |||||||||| |||||| |||| Sbjct 357 TCATTGTGATGTATCTAATCCGGTTGCAACAACACCAATTTCTCCACCAGTAGAGCCACC 416 Query 417 TACGACTTCACCATCTTCCGCAAAGTCACCGGCCATAACCCCTTCATCACCGGCGGTTAG 476 ||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 417 TACGACTTCACCACCTTCAGCAAAGTCGCCGGCCATGACCCCTTCATCACCGGCGGTTAG 476 Query 477 CCACTCACCACCGCCCGTCAGGCACTCATCC-CCGCCGGTTAGTCACTCATCACCGCCAG 535 |||||||||||| || || || |||||| || || ||||| || |||||| ||||||||| Sbjct 477 CCACTCACCACCACCGGTTAGCCACTCA-CCACCACCGGTGAGGCACTCACCACCGCCAG 535 Query 536 TTAGTCACTCATCACCACCAACTAGCCGCTCATCACCGGCTGTTAGCCACTCATCACCGG 595 |||| |||||| | | ||| ||| | | | | || ||||||||||||| Sbjct 536 TTAGGCACTCA-C-C-ACC-----GCC----A-----G--T-T-AGGCACTCATCACCGG 574 Query 596 TGGTGGCTGCTTCATCACCGGTAAAGGCTGTCTCATCATCGAC--C----GCTTCATCAC 649 ||| |||||||||||||||| ||||||| ||||||||||| || | |||||||||| Sbjct 575 TGGAGGCTGCTTCATCACCGTTAAAGGCCGTCTCATCATCCACGGCAATCGCTTCATCAC 634 Query 650 CTAGGGCAGCTTCCCCGTCACCGTCACCGTCACCATCAATATCTAGTAGCGGGATTTTAT 709 | | |||||||||||||||||||||||| | ||||||||||||| ||||||||||| Sbjct 635 CGATGGCAGCTTCCCCGTCACCGTCACC---A---TCAATATCTAGTACCGGGATTTTAT 688 Query 710 TAGTATCCAAACTATTCATAGCTGTTGTGATGGTTTCTTCTTTTCTTTACATCTTAGCTT 769 ||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| |||| Sbjct 689 CAGTATCCAAACAATTCCTAGCTGCTGTGATGGTTTCTTCTTTTGTTTACATCTTCGCTT 748 Query 770 AG 771 || Sbjct 749 AG 750 > Ahg922765 jgi|Araly1|922765|scaffold_104046.1 Length=310 Score = 344 bits (186), Expect = 5e-94 Identities = 242/269 (90%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 1 ATGAAGCCATCC-TTTGTTCTTCTATCTATTGTACTATTACTCTCATCATCACTATCGGA 59 ||||||||| || |||||||||||||||||| ||||||| | ||||||||||||||||| Sbjct 21 ATGAAGCCA-CCGTTTGTTCTTCTATCTATTACACTATTAGTATCATCATCACTATCGGA 79 Query 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACCGTCGATGGCTCCAACACCGCAACCATC 119 |||||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||| Sbjct 80 TGCAGCCGACTTTGGATCGCCGTCACAGCCACCGTTGATGTCTCCAACACCAAAACCATC 139 Query 120 AAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAAC 179 |||||||| ||||||||||||| |||| |||| |||| | |||||||| ||||||||||| Sbjct 140 AAACTCCATCGACTGTTCCAGCATCATCTACAACATGATGGATTGTCTATCCTTCTTAAC 199 Query 180 CGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTCT 239 ||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 200 CGTCGAATCAACCGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTCT 259 Query 240 T-AACTATAGCCCTAAGTGTCTTTGCTCT 267 | || |||| ||| ||||||||||| ||| Sbjct 260 TGAA-TATAACCCAAAGTGTCTTTGTTCT 287 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5