BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36150.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913470 jgi|Araly1|913470|Al_scaffold_0001_3724 856 0.0
Ahg922765 jgi|Araly1|922765|scaffold_104046.1 344 5e-94
> Ahg913470 jgi|Araly1|913470|Al_scaffold_0001_3724
Length=750
Score = 856 bits (463), Expect = 0.0
Identities = 683/782 (87%), Gaps = 43/782 (5%)
Strand=Plus/Plus
Query 1 ATGAAGCCATCCTTTGTTCTTCTATCTATTG-TACTATTACTCTCATCATCACTATCGGA 59
||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
Sbjct 1 ATGAAGCCATCTTTTGTTCTTCTATCTATTGCT-CTATTACTATCATCATCACTATCGCA 59
Query 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACC-GTCGATGGCTCCAACACCGCAACCAT 118
|||| ||||||||||||| |||||||| ||||| || |||| ||||||||||| ||||||
Sbjct 60 TGCATCCGACTTTGGATCGCCGTCACACCCACCGGT-GATGTCTCCAACACCGGAACCAT 118
Query 119 CAAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAA 178
||||||||| ||||||||| |||||||| ||||||||||| |||||||| ||||||||||
Sbjct 119 CAAACTCCATCGACTGTTCTAGCGTCATCTACAGCATGGTGGATTGTCTATCCTTCTTAA 178
Query 179 CCGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTC 238
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 179 CCGTCGGATCAACTGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTC 238
Query 239 TT-AACTATAGCCCTAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGAAATGGGATTC 297
|| || |||| ||| |||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 239 TTGAA-TATAACCCAAAGTGTCTTTGCTCTGCGTTAGAGAGTAGTCGTGCAATGGGTTTC 297
Query 298 GTACTTGATGATACAAAAGCTCTTGCCATGCCTAAAATTTGCAACGT-CCCTATTGATCC 356
||||| |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 298 GTACTAGATGATACCAAAGCTCTTGCCATGCCTAAAATTTGCAACGTTCCC-ATTGATCC 356
Query 357 TAATTGTGATGTATCTACTCCGGCTGCATCAACACCAGTTTCTCCACCGGTAGAGTCACC 416
| ||||||||||||||| ||||| |||| |||||||| |||||||||| |||||| ||||
Sbjct 357 TCATTGTGATGTATCTAATCCGGTTGCAACAACACCAATTTCTCCACCAGTAGAGCCACC 416
Query 417 TACGACTTCACCATCTTCCGCAAAGTCACCGGCCATAACCCCTTCATCACCGGCGGTTAG 476
||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 417 TACGACTTCACCACCTTCAGCAAAGTCGCCGGCCATGACCCCTTCATCACCGGCGGTTAG 476
Query 477 CCACTCACCACCGCCCGTCAGGCACTCATCC-CCGCCGGTTAGTCACTCATCACCGCCAG 535
|||||||||||| || || || |||||| || || ||||| || |||||| |||||||||
Sbjct 477 CCACTCACCACCACCGGTTAGCCACTCA-CCACCACCGGTGAGGCACTCACCACCGCCAG 535
Query 536 TTAGTCACTCATCACCACCAACTAGCCGCTCATCACCGGCTGTTAGCCACTCATCACCGG 595
|||| |||||| | | ||| ||| | | | | || |||||||||||||
Sbjct 536 TTAGGCACTCA-C-C-ACC-----GCC----A-----G--T-T-AGGCACTCATCACCGG 574
Query 596 TGGTGGCTGCTTCATCACCGGTAAAGGCTGTCTCATCATCGAC--C----GCTTCATCAC 649
||| |||||||||||||||| ||||||| ||||||||||| || | ||||||||||
Sbjct 575 TGGAGGCTGCTTCATCACCGTTAAAGGCCGTCTCATCATCCACGGCAATCGCTTCATCAC 634
Query 650 CTAGGGCAGCTTCCCCGTCACCGTCACCGTCACCATCAATATCTAGTAGCGGGATTTTAT 709
| | |||||||||||||||||||||||| | ||||||||||||| |||||||||||
Sbjct 635 CGATGGCAGCTTCCCCGTCACCGTCACC---A---TCAATATCTAGTACCGGGATTTTAT 688
Query 710 TAGTATCCAAACTATTCATAGCTGTTGTGATGGTTTCTTCTTTTCTTTACATCTTAGCTT 769
||||||||||| |||| |||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 689 CAGTATCCAAACAATTCCTAGCTGCTGTGATGGTTTCTTCTTTTGTTTACATCTTCGCTT 748
Query 770 AG 771
||
Sbjct 749 AG 750
> Ahg922765 jgi|Araly1|922765|scaffold_104046.1
Length=310
Score = 344 bits (186), Expect = 5e-94
Identities = 242/269 (90%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCCATCC-TTTGTTCTTCTATCTATTGTACTATTACTCTCATCATCACTATCGGA 59
||||||||| || |||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 21 ATGAAGCCA-CCGTTTGTTCTTCTATCTATTACACTATTAGTATCATCATCACTATCGGA 79
Query 60 TGCAGCCGACTTTGGATCACCGTCACAGCCACCGTCGATGGCTCCAACACCGCAACCATC 119
|||||||||||||||||| |||||||||||||||| |||| |||||||||| |||||||
Sbjct 80 TGCAGCCGACTTTGGATCGCCGTCACAGCCACCGTTGATGTCTCCAACACCAAAACCATC 139
Query 120 AAACTCCACCGACTGTTCCAGCGTCATATACAGCATGGTTGATTGTCTCTCCTTCTTAAC 179
|||||||| ||||||||||||| |||| |||| |||| | |||||||| |||||||||||
Sbjct 140 AAACTCCATCGACTGTTCCAGCATCATCTACAACATGATGGATTGTCTATCCTTCTTAAC 199
Query 180 CGTCGGATCAACGGATCCAAGCCCGACCAAAACATGTTGTGTTGGGGTCAAAACCGTTCT 239
||||| |||||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 200 CGTCGAATCAACCGATCCAAGCCCGACCAAAACGTGTTGTGTTGGGATCAAAACCGTTCT 259
Query 240 T-AACTATAGCCCTAAGTGTCTTTGCTCT 267
| || |||| ||| ||||||||||| |||
Sbjct 260 TGAA-TATAACCCAAAGTGTCTTTGTTCT 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5