BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36240.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922771 jgi|Araly1|922771|scaffold_104052.1 588 9e-168
Ahg479380 jgi|Araly1|479380|fgenesh2_kg.3__2081__AT3G18740.1 455 1e-127
> Ahg922771 jgi|Araly1|922771|scaffold_104052.1
Length=385
Score = 588 bits (318), Expect = 9e-168
Identities = 332/339 (98%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 1 ATGGTTGCAGCGAAGAAGACGAAGAAGTCCCATGAAGGAATCAACAGCAGATTGGCTTTG 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 23 ATGGTTGCAGCGAAGAAGACGAAGAAGTCTCATGAAGGAATCAACAGCAGATTGGCTTTG 82
Query 61 GTGATGAAGAGTGGCAAATACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 GTGATGAAGAGTGGCAAATACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCAGT 142
Query 121 TCCAAAGGTAAGTTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCTGAGATT 180
|||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 143 TCCAAAGGTAAGCTGATATTTATATCTAGCAATTGCCCACCATTGAGGAGGTCTGAGATT 202
Query 181 GAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATAGAAACAATGTTGAT 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 203 GAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGAAACAATGTTGAT 262
Query 241 CTTGGTACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCAGGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 CTTGGTACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCAGGT 322
Query 301 GACTCTGACATCATCAAGTCGCTTCCTGGAGACCAGTGA 339
|||||||||||||||||| | ||||||||||||||||||
Sbjct 323 GACTCTGACATCATCAAGGCACTTCCTGGAGACCAGTGA 361
> Ahg479380 jgi|Araly1|479380|fgenesh2_kg.3__2081__AT3G18740.1
Length=442
Score = 455 bits (246), Expect = 1e-127
Identities = 311/342 (91%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGCAGCGAAGAAGACGAAGAAGTCCCATGAAGGAATCAACAGCAGATTGGCT-TT 59
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 4 ATGGTTGCGGCGAAGAAGACGAAGAAGTCCCATGAGGGAATCAACAGCAGATTAGCTCTT 63
Query 60 GGTGATGAAGAGTGGCAAA-TACACTCTTGGTTACAAATCTGTTCTCAAATCTCTTCGCA 118
|||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 64 -GTGATGAAGAGTGG-AAAGTACACTCTTGGATACAAATCTGTTCTCAAATCCCTTCGCA 121
Query 119 GTTCCAAAGGTAAGTTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCTGAGA 178
| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 GCTCCAAAGGTAAGCTGATATTGATATCTAGCAATTGCCCACCATTGAGGAGATCAGAGA 181
Query 179 TTGAGTACTATGCTATGCTTGCTAAAGTTGGAGTTCATCACTACAATAGAAACAATGTTG 238
|||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 182 TTGAATACTATGCCATGCTTGCTAAAGTTGGAGTTCATCACTACAATGGCAACAATGTTG 241
Query 239 ATCTTGG-TACTGCCTGCGGTAAATACTTCCGTGTGTCATGCCTCAGCATAGTTGACCCA 297
|| |||| |||||| || |||||||||||||| || || ||||||||||| ||||| ||
Sbjct 242 AT-TTGGGTACTGCTTGTGGTAAATACTTCCGAGTCTCTTGCCTCAGCATCGTTGATCCT 300
Query 298 GGTGACTCTGACATCATCAAGTCGCTTCCTGGAGACCAGTGA 339
||||| || |||||||||||| | ||||||||||| ||||||
Sbjct 301 GGTGATTCCGACATCATCAAGGCACTTCCTGGAGATCAGTGA 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12019010535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5