BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36310.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473716 jgi|Araly1|473716|fgenesh2_kg.1__3670__AT1G36310.1 2001 0.0
> Ahg473716 jgi|Araly1|473716|fgenesh2_kg.1__3670__AT1G36310.1
Length=1548
Score = 2001 bits (1083), Expect = 0.0
Identities = 1416/1569 (90%), Gaps = 54/1569 (3%)
Strand=Plus/Plus
Query 4 CAATTCCTCCTCCCAAAACCCTAAATCGACCTTCGTGACCCTCCGTTTCAGATCACGGAC 63
|||||||||||||||||||||||||| | | ||| |||||||||||||||| ||
Sbjct 1 CAATTCCTCCTCCCAAAACCCTAAAT----C--C---ACCTTCCGTTTCAGATCACGAAC 51
Query 64 CGACGCTTGCTCTGTGCTCATCGTTCTCTT-CTTC-ACTTTATTCATGGT-G-GTTTAGT 119
|||| | | | || ||||||||||||| || |||| | ||||||||| | ||||||
Sbjct 52 CGACACAT-C-CTCTGCTCATCGTTCT-TTACTTCTGC-AGATTCATGGTGGTGTTTAGC 107
Query 120 TCATGATTTTGGATGTTTTAAGAAC--TT-----TTTCTACTAGAACTCGAAATCTTCCA 172
||||||||||||||||||| ||||| || ||||| | ||| ||| ||||||||||
Sbjct 108 TCATGATTTTGGATGTTTTGAGAACTATTAGAACTTTCT-CCAGAGCTCAAAATCTTCCA 166
Query 173 AGTTCTGGTTTTTATTCGATAAGTACTAGTATAATGCGAGATATCAAAGTCAAATCTGAT 232
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 167 AGTTCTGGTTTTTATTCGATAAGTACAAGTAAAATGCGAGATATCAAAGTCAAATCTGAT 226
Query 233 TCTAAGGAGTTTCTAACATCATCTGATGAAGAAGAAGAATCAGTTTC-CATTA--GAGT- 288
|||||||| |||||||| ||||||||||||||||||||| ||| ||| |||| || |
Sbjct 227 TCTAAGGATTTTCTAACGTCATCTGATGAAGAAGAAGAAACAG-TTCAGATTATTGAATC 285
Query 289 -GTCGT-C-TT----CTTCTTCCTTGAGTAGTGTTAAATCGACGCCTGAGATTGAGAAAA 341
|| | | || || ||||| | |||||||||||||| ||||||||||||||||
Sbjct 286 GGT-TTCCATTAGAGAGTCGTCCTT--G-AGTGTTAAATCGACACCTGAGATTGAGAAAA 341
Query 342 AGTATGTTCATCGAGTTTACGATGCGATTGCTCCTCATTTTAGCTCTACTAGGTTTGCTA 401
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 342 AGTATGTTCATCGGGTTTACGATGCGATTGCTCCACATTTCAGCTCTACTAGGTTTGCTA 401
Query 402 AGTGGCCTAAAGTTGCTGCCTTTCTCGAATCGTTACCGTCTGGATCGGTGATTCTCGATG 461
| ||||||||||||||||||||||| |||||||| || |||| ||||||||||| ||||
Sbjct 402 AATGGCCTAAAGTTGCTGCCTTTCTTGAATCGTTGCCCCCTGGGTCGGTGATTCTTGATG 461
Query 462 CCGGTTGCGGTAACGGGAAGTATTTGGGGTTGAATCCTAGTTGTTTCTTCATAGGTTGTG 521
| |||||||| || |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 462 CGGGTTGCGGGAATGGGAAGTATTTGGGGTTGAACCCGAGTTGTTTCTTCATAGGTTGTG 521
Query 522 ATATAAGTCATCCTTTGATTAAAATCTGTTCGGATAAAGGGCAAGAGGTTTTGGTTGCAG 581
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 ACATAAGTCATCCGTTGATTAAAATCTGTTCGGATAAAGGGCAAGAGGTTTTGGTTGCAG 581
Query 582 ATGCTGTTAATCTTCCTTATAGAGAGGAGTTTGGCGATGCAGCGATTTCGATAGCGGTTT 641
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 582 ATGCTGTGAATCTTCCTTATAGAGAGGAGTTTGGCGATGCAGCGATCTCGATAGCGGTTT 641
Query 642 TGCATCATTTGAGTACAGAGAATAGAAGGAAGAAAGCTATTGAAGAACTTGTTCGTGTTG 701
|||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 642 TGCATCATTTAAGTACAGAGAATAGAAGGAAGAAAGCTATTGAAGAGCTGGTCCGGGTTG 701
Query 702 TTAAGCCTGGTGGATTTGTTCTCATTACTGTTTGGGCTGCTGAACAGGAGGATACATCGT 761
||||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 702 TTAAGCCAGGGGGATTCGTTCTCATTACGGTTTGGGCTGCAGAACAGGAGGATACATCGT 761
Query 762 TGCTTACGAAATGGACACCTTTGTCTGCTAAGTATGTTGAGGAATGGGTTGGTCCAGGTA 821
|||| || ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 762 TGCTCACCAAATGGACACCCTTGTCTGCAAAGTATGTTGAGGAATGGGTTGGGCCAGGTA 821
Query 822 GTCCGATGAATAGTCCTCGTGTGAGGAACAATCCGTTCTTTAGTCTTGAGAGTATCCCAG 881
|||| ||||| || ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 822 GTCCAATGAACAGCCCTCGTGTGAGGAACAACCCGTTCTTTAGTCTTGAGAGCATCCCAG 881
Query 882 AGACTGAGGTGAGTACAAAGGAGCAAAAGGTTGAGAACAGTCAGTTCATCGGTCTTGAAA 941
|||||||||||||||||||||||||||||| ||||||||| | ||||| |||||||| |
Sbjct 882 AGACTGAGGTGAGTACAAAGGAGCAAAAGGCTGAGAACAGCCCTTTCATTGGTCTTGAGA 941
Query 942 GCATTCCAGAGAGCGAGGAGAGTACGAGAGAGCAGAA-AGGTGAGAGTATTATTCCAGAA 1000
|||||||||||||||||||||| ||||||||||| || ||||||||| ||||| |||||
Sbjct 942 GCATTCCAGAGAGCGAGGAGAGCACGAGAGAGCA-AAGAGGTGAGAGCATTATCCCAGAG 1000
Query 1001 ACCAAAGCTAGTATAGTAGAGCAAAAGGATGAGAAATCTGTTGAGGAGTCATTGGAGGCT 1060
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1001 ACCAAAGCTAGCATAGTAGAGCAAAAGGATGAGAACTCTGTTGAAGAGTCATTGGAGGCT 1060
Query 1061 CTGAAGAAGAGTCAACAAGAGTACTTTGTGCCATGGCATTTACCATACCACCGTGCTGAA 1120
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1061 CTGAAGAAGAGTCAACAAGAGTACTTTGTTCCATGGCATTTACCGTACCACCGTGCTGAA 1120
Query 1121 GTGAGTGGTGCATCTGCGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAA 1180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1121 GTGAGTGGTGCATCTGCGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGACGATAGAAAA 1180
Query 1181 GGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGGTTG 1240
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1181 GGAGCTGTTGTGTACAACAGATACTACCACGTCTTCAGTGAAGGCGAACTTGAAAGGTTG 1240
Query 1241 GCATCTGGAGTAGGCAATGCAATGATAGTTGATAGATTTTTCGACAAGTCGAATTGGTGT 1300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1241 GCATCTGGAGTAGGCAATGCAATGATAGTTGATAGATTTTACGACAAGTCGAATTGGTGC 1300
Query 1301 ATTGTTCTTCAGAAAGAAGCTTTAAACCAAGATTGAACTTTGGTTTCAAACT----TAT- 1355
|||||||||||||||| ||||||||||||||||||| || |||||||||||| |||
Sbjct 1301 ATTGTTCTTCAGAAAGCAGCTTTAAACCAAGATTGATCTCTGGTTTCAAACTCAGATATA 1360
Query 1356 C-----AAATCTTTGTGATATTGGAACTCCATTGCATATGTAATCGGAAATTATTATTGC 1410
| ||||||||| || ||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1361 CTTTCCAAATCTTTGCGACATTGGAACTCCATTGCATATGTAATCGAAAATTATCATTGC 1420
Query 1411 ATTTTTCATGGTTGTAGTTTGAGATTCTGTGGCAGCTCATTTTCCCTGCAATTTGTTGTC 1470
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1421 ATTTTTCATGGTTGTAGTTTGAAATTCTGTGGCAGCTCATATTCCCTGCAATTTGTTGCC 1480
Query 1471 TTTAAGGGGTTTTGTATTATGTGTAACACAAATCAAAGAAAGAATCTTCTCTACATGATA 1530
||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||
Sbjct 1481 TTTAAGGGGTTTTGTATTATGTGTAACACAAATGAAAGCAAGAAT-TTCTCTACGTGATA 1539
Query 1531 AACAAAATG 1539
||||| |||
Sbjct 1540 AACAAGATG 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5