BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36320.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473719 jgi|Araly1|473719|fgenesh2_kg.1__3673__AT1G36320.1 2146 0.0
> Ahg473719 jgi|Araly1|473719|fgenesh2_kg.1__3673__AT1G36320.1
Length=1421
Score = 2146 bits (1162), Expect = 0.0
Identities = 1341/1427 (94%), Gaps = 13/1427 (1%)
Strand=Plus/Plus
Query 3 TCTCCGGCTAAAACCCTTTCTTCTATCATCTATGCGAAAGCTTCATCTTC-TTCAAAGAA 61
||||||||||||||||||||||||||||||| || |||||||| | ||| |||||||||
Sbjct 1 TCTCCGGCTAAAACCCTTTCTTCTATCATCTCTGTGAAAGCTT--TGTTCTTTCAAAGAA 58
Query 62 AATGGTTTCAGTGTTATTCCAATCTTCATGTTCCTGTTCACTTTCTAGCTTTCGCTCTGT 121
||||||||| || |||||||||||||| ||||| ||||||||||||| ||| | ||||||
Sbjct 59 AATGGTTTCCGTTTTATTCCAATCTTCTTGTTCTTGTTCACTTTCTAACTTCCCCTCTGT 118
Query 122 AAAATTCGGAGCCCGT-TTAGTCTCTCCTCTGTATTTCGCCGGCAATCATGTTCATGTCA 180
|||||||||||| ||| || || |||||||||||||||||||| |||||||| |||||||
Sbjct 119 AAAATTCGGAGCTCGTGTT-GTTTCTCCTCTGTATTTCGCCGGAAATCATGTACATGTCA 177
Query 181 CTTCCGGTAGTCTTCCAATCGGAAAAGGAAGTTTATTGAACCTCAAGAGTGAAAGACCTC 240
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 178 CTTCCGGTGGTCTTCCAATCGGAAAAGGAAGTTTATTGAACTTCAAGAGTGAAAGACCTC 237
Query 241 AGAGATTTGTTATCTCAGCTGTTGTGGATGATAAAAGTGTTGTAGCTAAAGAGGAGAAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGAGATTTGTTATCTCAGCTGTTGTGGATGATAAAAGTGTTGTAGCTAAAGAGGAGAAGA 297
Query 301 AAGATGGTTCTGA--AGAGGTTGTTGTAGATAACCAGAGAATGATCAAAGTTTGTGATAA 358
|||| || | || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAGACGG-T-GGATCAGAAGTGGTTGTAGATAACCAGAGAATGATCAAAGTTTGTGATAA 355
Query 359 GCTTATTGAGGTTTTTATGGTTGATAAGCCTACACCATCTGATTGGAGAAGATTGTTAGC 418
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 356 GCTTATTGAGGTTTTTATGGTTGATAAGCCTACTCCATCTGATTGGAGAAGACTCTTAGC 415
Query 419 TTTTAGCAAAGAATGGGATAGTATACGGCCACATTTCTATAAACGGTGTCAGGAACGAGC 478
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 416 TTTTAGCAAAGAATGGGATAGTATCCGGCCACATTTCTACAAACGGTGTCAGGAACGAGC 475
Query 479 TGATTCTGAGGATAACCCTGAGATGAAGCATAAGGTTCATCGACTTGCAAGGAAGCTCAA 538
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 476 GGATTCTGAGGATAATCCTGAGATGAAGCATAAGGTTCATCGGCTTGCAAGAAAGCTCAA 535
Query 539 GGAGGTTGATGAAGATATTCAAAGGCATAATGAGCTTCTCAATGTTATCAAGAGGACACC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGAGGTTGATGAAGATATTCAAAGGCATAATGAGCTTCTCAATGTTATCAAGAGGACACC 595
Query 599 ACCAGCTGAAATTGGTGAACTTGTTGCTAGGCGTCGTAAAGATTTCACAAACGAGTTTTT 658
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 596 ACCGGCTGAAATTGGTGAACTTGTTGCCAGGCGTCGTAAGGATTTCACAAATGAGTTTTT 655
Query 659 TGAGCATTTGCATACTGTTGCTGAATCCTACTATGACAATCCGGATGAGCAAAATGCTCT 718
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 656 CGAGCATTTGCATACTGTTGCAGAATCCTACTATAACAATCCGGATGAGCAAAACGCTCT 715
Query 719 TGCGTCACTTGGGAAGTTGTCTATAGCTGCTGTACAAGCTTATGACACTTCAACAGAAAG 778
||| |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 716 TGCATCACTTGGGAAGTTGTCTATCGCGGCTGTACAAGCATATGACACTTCAACAGAAAG 775
Query 779 CATTGATGCGCTAAATGCTGCGGAAATGAAGCTTCAGGACATTATCAACTCTCCTTCGCT 838
|||||| || ||||| ||||||||| ||||||| |||||||| ||||| || ||||| ||
Sbjct 776 CATTGACGCACTAAACGCTGCGGAATTGAAGCTCCAGGACATAATCAATTCCCCTTCTCT 835
Query 839 TGATGCTGCCTGTAGAAAGATTGATAGTTTGGCTGAGAAGAATCAACTTGATTCTGCGTT 898
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 836 TGATGCTGCCTGCAGAAAGATTGATAGTTTAGCTGAGAAGAATCAACTTGATTCTGCGTT 895
Query 899 GGTTCTTATGATCACTAAAGCTTGGTCGGCTGCTAAGGAATCCAACATGATGAAAGAAGA 958
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 GGTTCTTATGATCACAAAAGCTTGGTCTGCTGCTAAGGAATCCAACATGATGAAAGAAGA 955
Query 959 GGTAAAAGACATATTGTATCACTTGTACGTAACAGCAAGAGGGAATCTGCAGAGGCTGAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 GGTAAAAGACATATTGTATCACTTGTACGTAACAGCAAGAGGGAATCTGCAGAGGCTTAT 1015
Query 1019 GCCGAAAGAGGTGAGAATACTTAAGTATCTACTATCAATAGAGGATCCCCAAGAACAGAT 1078
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1016 GCCGAAAGAAGTGAGAATACTTAAGTATCTACTATCGATAGAGGATCCCCAAGAACAGAT 1075
Query 1079 AAGCGCTCTACAAGATGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTA 1138
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGCGCTCTACAAGACGCTTTTACCCCTGGGGACGAGCTCGAAGGGACTGATGTAGACTA 1135
Query 1139 CTTATACACGACGCCTGAGCATTTGCAGAGCTTGATGAAAACGGTGTTGGAAGCGTATCA 1198
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1136 CTTATACACGACGCCTGAGCATTTGCAGAGCTTGATGAAAACAGTGTTGGAGGCGTATCA 1195
Query 1199 TTTCAGCAGAGAAGGGAGTCTAGTGAAGGAAGCAAAAGACCTTATGCATCCTGAGCTCAT 1258
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 TTTCAGCAGAGAAGGGAGTCTAGTGAAGGAAGCAAAGGACCTTATGCATCCTGAGCTCAT 1255
Query 1259 CGCCAAAATCGAACAACTCAAGAAGCTTGTTGAAAAGAAGTATATGTGATAAAAAACTTT 1318
|||||||||||||||||||||||||||| ||||||||||||||||||||| || | |||
Sbjct 1256 CGCCAAAATCGAACAACTCAAGAAGCTTATTGAAAAGAAGTATATGTGATCAAGAT-TTT 1314
Query 1319 ACAGATCCTAAGCTCT-CGTA-ATTTGTTACTATGTATGT-TTTGTATATGGTGTATGAC 1375
|||||||||||||| | | | |||||||||||||||||| ||||| |||||||||||||
Sbjct 1315 ACAGATCCTAAGCTTTTCTTTCATTTGTTACTATGTATGTGTTTGTGTATGGTGTATGAC 1374
Query 1376 ATTCTTCAGGTTTCTGTTTCACACATATATGTGATACCACCATAAGA 1422
|||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 1375 ATTCTTCAGGTTTCCGGTTCACACATATATTTGATACCACCATAAGA 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5