BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36340.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314056 jgi|Araly1|314056|fgenesh1_pm.C_scaffold_1002836 571 2e-162
Ahg314037 jgi|Araly1|314037|fgenesh1_pm.C_scaffold_1002817 326 2e-88
> Ahg314056 jgi|Araly1|314056|fgenesh1_pm.C_scaffold_1002836
Length=465
Score = 571 bits (309), Expect = 2e-162
Identities = 419/471 (89%), Gaps = 12/471 (3%)
Strand=Plus/Plus
Query 29 ATGTTTAAGAAAATGGATAAAAAAGCAGCGCAGAGAATTGCGATGGAATACAGAGCTATG 88
||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||||
Sbjct 1 ATGTTTAAGAAAATGGATAAAAAAGCAACGCAGAGAATTGAGAAGGAATACAAAGCTATG 60
Query 89 ATCTCGAAAGAATCTTTGTTCAGTATTGGTCAAAACTCGAACAATATATACGAATGGACT 148
|||||||| || ||||||| ||||||||||| | |||||||| |||||||| ||||||
Sbjct 61 ATCTCGAATGACTCTTTGTACAGTATTGGTCGAGACTCGAACGATATATACAAATGGAAA 120
Query 149 GCAGTGATCCGGGGTCCA-GATGGCACTCCCTATGAAGGTGGCATGTTTAATC-TCAG-T 205
|| |||||| |||||| | ||| |||||||||||||||||||| ||||| | || | |
Sbjct 121 ACAATGATCCATGGTCCACG-TGGTACTCCCTATGAAGGTGGCATATTTAA-CATC-GAT 177
Query 206 ATTAAGTTTCCTACGGATTATCCTTTTAAACCACCCAAGTTTACGTTTAAAACTCCGATT 265
|||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 178 ATTAAGTTTCCTACAGATTATCCTTTTAAACCACCCAAGTTTACGTTCAGAACTCCGATT 237
Query 266 TACCATCCAAATATCAATGATGAAGGATCGATTTGCAT-GAACATTCTTAAAGACAAATG 324
|||||||||||||||||||||||||| || |||||| | || ||||||||||||||| ||
Sbjct 238 TACCATCCAAATATCAATGATGAAGGGTCAATTTGCCTTGA-CATTCTTAAAGACAAGTG 296
Query 325 GACTCCTGCTCTTATGGTTGAAAAGGTGCTTCT-GTCAATA-CTTTTACTATTGGAAAAA 382
||||||| |||||| ||||||||||||||| || ||| ||| | || ||||||||| |
Sbjct 297 GACTCCTACTCTTACGGTTGAAAAGGTGCT-CTTGTCCATAACGTT-ACTATTGGAGGAT 354
Query 383 CCAAACCCAGATGATCCTCTTGTACCTGAAATTGGACAGCTCTTCAAGAATAACAGATTC 442
||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 355 CCAAACCCAGATGATCCTCTTGTACCTGATATTGGACAACTCTTCAAGAATAACCGATTC 414
Query 443 CAATTTGACCAGAGAGCTCGAGAATTCACTGCTCGACATGCTAATAATTAA 493
| ||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 415 CTATTTGACCAGAGAGCCCGAGAATTCACTGCACGACATGCTAATGATTAA 465
> Ahg314037 jgi|Araly1|314037|fgenesh1_pm.C_scaffold_1002817
Length=462
Score = 326 bits (176), Expect = 2e-88
Identities = 360/444 (81%), Gaps = 31/444 (7%)
Strand=Plus/Plus
Query 58 GCAGAGAATTGCGATGGAATACAGAG-CTATGATCTCGAAAGAATCTTTGTTCAGTATTG 116
|||| ||||||||| |||| ||| | | |||| ||| || ||||||| ||||||||
Sbjct 24 GCAGCGAATTGCGAAAGAATTCAGGGAC-ATGACCTCCCCAGCTTCTTTGTACAGTATTG 82
Query 117 GTCA-A-A--ACTCGAACAATATATACGAATGGAC-TGCAG-TGATCCGGGGTCCAGATG 170
|| | | | |||| |||||| ||| | ||||| | || | |||| | || || | |
Sbjct 83 GT-AGAGACGACTCAAACAATGTATTCAAATGG-CAAGC-GATGATTCAAGGACCCCAAG 139
Query 171 GCACTCCCTATGAAGGTGGCATGTTTAATC-TCAG-TATTAAGTTTCCT-ACGGATTATC 227
| ||||| |||| |||||||||||| | | || | ||| |||||||| | |||||||
Sbjct 140 GTACTCCTTATGCCGGTGGCATGTTT-AGCATC-GACATTGAGTTTCCTGA-AGATTATC 196
Query 228 CTTTTAAACCACCCAAGTTTACGTTTAAAACTCCGATTTACCATCCAAATATCAA-T-GA 285
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct 197 CTTTTAAACCACCCAAGTTTACATTCAAAACTCCGATTTACCATCCAAATATCAATTCCA 256
Query 286 TGAAGGATCGATTTG-CATGAACATTCTTAAAGACAAATGGACTCCTGCTCTTA-TGGTT 343
| |||||||||||| | || |||||||||||||||| ||||||||| |||| | | |||
Sbjct 257 -G-AGGATCGATTTGTCTTG-ACATTCTTAAAGACAAGTGGACTCCTTCTCTCACT-GTT 312
Query 344 GAAAAGGTGCTTC-TGTCAAT-ACTTTTACTATTGGAAAAACCAAACCCAGATGATCCTC 401
|||||||||| || |||| || || | ||| |||| | |||||||||||||||||||
Sbjct 313 GAAAAGGTGC-TCTTGTCCATAAC-TGCACTGTTGGCGGATCCAAACCCAGATGATCCTC 370
Query 402 TTGTACCTGAAATTGGACAGCTCTT-CAAGAATAACAGATTCCAATTTGACCAGAGAGCT 460
||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 371 TTGTACCTGAAATTGGAGAACT-TTACAAGAATAACAGATTCCAATTTGACCAGAGAGCT 429
Query 461 CGAGAATTCACTGCTCGACATGCT 484
|| |||||||| | |||||||||
Sbjct 430 CGGGAATTCACCGAGCGACATGCT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5