BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36370.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922779 jgi|Araly1|922779|scaffold_104060.1 2907 0.0
> Ahg922779 jgi|Araly1|922779|scaffold_104060.1
Length=1826
Score = 2907 bits (1574), Expect = 0.0
Identities = 1753/1839 (95%), Gaps = 14/1839 (1%)
Strand=Plus/Plus
Query 43 TCTTCATCATCTTCAACGTTTATGGATTTGAGTCGTTCTCAAACAAATTTTCAATTAGGG 102
|||||||| ||||||| |||||||||||||| || |||||| | ||||||| |||||||
Sbjct 1 TCTTCATCTTCTTCAAATTTTATGGATTTGAGCCGCTCTCAATCTAATTTTCCATTAGGG 60
Query 103 TTTGGTTGTTCACACGCATCAATGACTCCAACACCAACACCAAGAGCTCCAATCGCAGAC 162
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTTGGTTGTTCTCACGCATCAATGACTCCAACACCAGCACCAAGAGCTCCAATCGCAGAC 120
Query 163 GATTCGATTAATCTACAAGTCGATCAAAGTTTCCGATCATTACCAACAACTTTCTCTCCG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCGATTAATCTACAAGTCGATCAAAGTTTCCGATCATTACCAACAACTTTCTCTCCG 180
Query 223 ATTCCGTTACAATTACTCGAACAAAAAGCCGAGAAGACCACCACCGTTGATGAGCCAAAG 282
|||||||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||
Sbjct 181 ATTCCGTTGCAATTACTCGAACAAAAAGTCGAGAAG---ATCACCGTCGATGAGCCAAAG 237
Query 283 AAAGATGGAGGAGGAGGAGGAGATCA-AAAGGAAGACGAGCATTTCAGAATCTTAGGTCA 341
| | | || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 238 --A-A---A-GA--CGGAGGAGATCAGAAA-GAAGACGAGCATTTCAGAATCTTAGGTCA 287
Query 342 CCATATGTGTCTCAAAAGGCAAAGAGATTGTCCACTTTTGTTAACGCAATCAAAGCATCC 401
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 288 TCATATGTGTCTCAAAAGGCAAAGAGATTGTCCACTTTTGTTAACTCAAGCGAAGCATCC 347
Query 402 GAAGAGAAGTTCCATCGGTGATTCAGATCTGGAATCGCGACGTGCTGCTGTACGAGCTTG 461
||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| ||
Sbjct 348 GAAGAGAAGTTCCATTGGTGATACAGATCTGGAATCGAGACGTGCTGCTGTACGAGCGTG 407
Query 462 GGGTGATCAACCGATTCATTTGGCGGATCCTGATATTCATGAGCTTATGGAGAAAGAGAA 521
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 GGGTGATCAACCAATTCATTTGGCGGATCCTGATATTCATGAGCTTATGGAGAAAGAGAA 467
Query 522 GCAACGACAAGTAAGAGGAATTGAATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGT 581
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GCAAAGACAAGTAAGAGGAATTGAATTGATTGCTTCTGAGAATTTCGTGTGTAGAGCTGT 527
Query 582 AATGGAAGCTTTAGGTAGTCATTTAACGAATAAATACTCTGAAGGTATGCCTGGAGCTAG 641
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 AATGGAAGCTTTAGGTAGTCATTTGACGAATAAATACTCTGAAGGTATGCCTGGAGCTAG 587
Query 642 ATACTATACTGGGAATCAATATATTGATCAGATTGAGAATCTCTGTATTGAGCGTGCTCT 701
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 588 ATACTATACTGGGAATCAATATATTGATCAGATTGAGAATCTGTGTATTGAAAGAGCTCT 647
Query 702 TACTGCGTTTGGTCTTGAATCTGATAAATGGGGTGTTAATGTTCAGCCTTATTCTTGTAC 761
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 648 TACTGCGTTTGGTCTTGAATCTGATAAATGGGGTGTTAATGTTCAGCCGTATTCTTGTAC 707
Query 762 TTCTGCTAACTTCGCGGTGTATACCGGACTTTTATTGCCCGGTGAACGGATTATGGGGCT 821
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 708 TTCTGCTAATTTTGCGGTGTATACCGGACTTTTATTGCCGGGTGAACGGATTATGGGGCT 767
Query 822 TGATTCGCCTTCTGGTGGTCATATGAGTCATGGTTATTGTACTCCTGGTGGGAAGAAGAT 881
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 768 TGATTCTCCTTCTGGTGGGCATATGAGTCATGGGTATTGTACTCCTGGTGGGAAGAAGAT 827
Query 882 TTCGGCTGCTTCCATCTTCTTTGAGAGTTTTCCTTATAAAGTGAATCCTCAAACTGGGTA 941
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTCGGCTGCTTCGATTTTCTTTGAGAGTTTTCCTTATAAAGTGAATCCTCAAACTGGGTA 887
Query 942 TATTGATTATGATAAGCTTGAAGATAAGGCGCTTGATTACCGTCCTAAGATTCTTATTTG 1001
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 888 TATTGATTATGATAAGCTTGAAGATAAGGCGCTTGATTACCGTCCAAAGATTCTTATTTG 947
Query 1002 TGGTGGGAGTTCTTATCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGATAA 1061
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 948 TGGAGGGAGTTCTTATCCTAGGGATTGGGATTTTGCAAGGGTTAGACAGATTGCAGACAA 1007
Query 1062 GTGTGGAGCTGTTTTGATGTGTGATATGGCTCATATTAGCGGTCTTGTTGCAACTAAGGA 1121
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 1008 GTGTGGAGCTGTTTTGATGTGTGATATGGCTCATATAAGCGGGCTTGTTGCGACTAAGGA 1067
Query 1122 ATGTTCAAATCCATTTGATCACTGTGACATAGTAACCTCCACTACTCACAAAGGTCTACG 1181
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1068 ATGTTCAAATCCATTTGATCACTGTGACATAGTTACCTCCACTACCCACAAAGGTCTACG 1127
Query 1182 TGGTCCTAGAGGAGGTATCATCTTCTACAGGAGAGGCCCAAAGATAAGAAAGCAGGGCCA 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TGGTCCTAGAGGAGGTATCATCTTCTACAGGAGAGGCCCAAAGATAAGAAAGCAGGGCCT 1187
Query 1242 TCACTCTAGCCATTGTGACACTTCCACGCATTACGATCTAGAGGAAAAGATCAACTTTGC 1301
|||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1188 TCACTCAAGCCATTCTGACACTTCCACGCATTACGATTTAGAGGAAAAGATCAACTTTGC 1247
Query 1302 TGTTTTTCCATCTCTACAAGGAGGTCCACACAACAACCATATCGCTGCTCTTGCCATTGC 1361
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1248 TGTTTTTCCATCGCTACAAGGAGGTCCACACAACAACCATATCGCAGCTCTTGCCATTGC 1307
Query 1362 ATTGAAACAAGTGGCCACTCCAGAGTACAAAGCTTACATACAACAGATGAAGAAAAACGC 1421
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CTTGAAACAAGTGGCTACTCCAGAGTACAAAGCTTACATACAACAGATGAAGAAAAACGC 1367
Query 1422 CCAAGCTTTAGCAGCAGCTCTTCTTAGAAGAAAATGCAGACTGGTTACTGGTGGTACAGA 1481
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1368 CCAAGCTTTAGCAGCAGCTCTGCTTAGAAGAAAATGCAGACTGGTTACAGGTGGCACAGA 1427
Query 1482 CAACCATTTGTTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAA 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CAACCATTTGTTGCTGTGGGATCTCACTCCTATGGGCTTAACAGGGAAAGTCTACGAGAA 1487
Query 1542 AGTGTGTGAGATGTGCCATATCACTTTAAACAAGACGGCTATATTCGGGGACAATGGTAC 1601
|||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 1488 AGTGTGCGAGATGTGCCATATAACCTTAAACAAGACTGCTATATTCGGGGACAATGGTAC 1547
Query 1602 AATATCTCCTGGAGGTGTAAGAATAGGGACACCCGCAATGACAACCCGAGGCTGTATAGA 1661
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1548 AATATCTCCTGGAGGTGTAAGAATAGGGACACCTGCGATGACAACCCGAGGCTGTATAGA 1607
Query 1662 GTCTGATTTCGAGACAATGGCGGATTTTCTGATAAAGGCGGCTCAGATAACAAGTGCGTT 1721
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1608 GTCTGATTTCGAGACAATGGCGGATTTTCTGATAAAGGCGGCTCAGATAACGAGTGCGTT 1667
Query 1722 GCAGAGAGAGCATGGAAAGTCACACAAGGAGTTTGTGAAAAGTTTATGCACCAACAAAGA 1781
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GCAGAGAGAGCATGGGAAGTCACACAAGGAGTTTGTGAAAAGTTTATGCACCAACAAAGA 1727
Query 1782 CATAGCTGAGCTTAGAAACCGAGTCGAAGCATTTGCTTTGCAGTATGAGATGCCTGCTTC 1841
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1728 AATATCTGAGCTTAGAAACCGAGTCGAAGCTTTTGCTTTGCAGTATGAGATGCCTGCTTC 1787
Query 1842 TCTTATTCGAATTGAATGAAAGAAAACTCCACACAACAG 1880
||||||||||||||||||||||||| | ||||||||||
Sbjct 1788 TCTTATTCGAATTGAATGAAAGAAATTTTCACACAACAG 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5