BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36380.1
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314057 jgi|Araly1|314057|fgenesh1_pm.C_scaffold_1002837 363 1e-99
> Ahg314057 jgi|Araly1|314057|fgenesh1_pm.C_scaffold_1002837
Length=252
Score = 363 bits (196), Expect = 1e-99
Identities = 230/246 (93%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 112 ATCTCCTTCGTTCCTTGACAATCTCTTCTTCTTCTTCCTCATACGTCCGCTTCTGGCGAT 171
||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||
Sbjct 6 ATCTCCTTCGTTCCTCGACAA--TC-TCTTCTTCTTCCTCATACGTCCGCTTCTTGCGAT 62
Query 172 CTCATTCGTCATCTGCTTCATCGCTCTTTGGTGGTTTCTAGCATGGAAGCTTGTATTAAG 231
|||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 63 CTCATTCGTCGTCTGCTTCATCGCTCTATGGTGGTTTCTGGCATGGAAGCTTGTATTAAG 122
Query 232 CCATGTTCCTCTAGTACAAGAGATCTTTGGCTTGAGGAAGAAAACCTTTATACCAAAACC 291
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 123 CCATGTTCCTCTAGTACAAGAGATCTTTGGCTTGAGGAAAAAAACCTTTAAACCAAAACC 182
Query 292 TGAATCTCGTGGTCGAATCGCCAAATTCTACAAAAGTATCAGTTCTCAGAATCCTGTTCC 351
|||||||| |||||||||||||| || |||| ||||||||||||||||||| |||||||
Sbjct 183 CGAATCTCGCGGTCGAATCGCCAAGTTTTACAGAAGTATCAGTTCTCAGAATTCTGTTCC 242
Query 352 CCAATG 357
||||||
Sbjct 243 CCAATG 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23598085623
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5