BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36390.1
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473721 jgi|Araly1|473721|fgenesh2_kg.1__3675__AT1G36390.2 1147 0.0
> Ahg473721 jgi|Araly1|473721|fgenesh2_kg.1__3675__AT1G36390.2
Length=1015
Score = 1147 bits (621), Expect = 0.0
Identities = 784/859 (91%), Gaps = 25/859 (3%)
Strand=Plus/Plus
Query 42 TCCAACAATGGCGATTTCTTTCGCAATCGATCCTTCCATAT-CTCCTTGCTTCTCCTTCT 100
||||||||||||||||||||||| ||||||||||||||| | |||||||||||| | ||
Sbjct 1 TCCAACAATGGCGATTTCTTTCGTAATCGATCCTTCCAT-TGCTCCTTGCTTCT-C--CT 56
Query 101 CCTCTCCATCTTCTTCATCAAAAACCTTACCTTTACGAAACAACCTCCATTTCCATGGCA 160
||| | | | || ||| |||| |||||||||| | |||||||||||||||||||
Sbjct 57 --TCT-C--C-GC-TC--CAAGAACCATACCTTTACG--A-AACCTCCATTTCCATGGCA 104
Query 161 GACCTTCACCAATATCTCCACTCATTTCAAAACCCAGTCGAAAATTCCCAATCTTCTCTG 220
| ||||||||||||| | ||||||||||||| || | |||||||||||||||||
Sbjct 105 G------ACCAATATCTCCATTGATTTCAAAACCCAATCTACGATTCCCAATCTTCTCTG 158
Query 221 CTCACCAAACTAATAACAGTGAAGAAGCGAATTCAAAGCAGCAAGCAGATGTAAAAACCC 280
|||||||| ||||||| ||||||||||||||||||||||| | |||||||||||| ||||
Sbjct 159 CTCACCAATCTAATAATAGTGAAGAAGCGAATTCAAAGCAACGAGCAGATGTAAATACCC 218
Query 281 TAATTAGGTCATATAAACAAGCTCTTC-TCAACGGAGACGAAACCTCAGTTACAGAAATC 339
|||||||||| ||||||||||||| || | || |||||||||| ||||||| ||||||||
Sbjct 219 TAATTAGGTCTTATAAACAAGCTC-TCTTTAATGGAGACGAAAGCTCAGTTGCAGAAATC 277
Query 340 GAAACGATGTTTTGCAAAATCGAGAAGGAGAAGAATAAAATGGATCAAAAGGTTTTATCT 399
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 278 GAAACGATGTTTTGCAAAATCGAGAAAGAGAAGAACAAAATGGATCAGAAGGTTTTATCA 337
Query 400 TTATCAATGAAGATAGCTTCAGAGAAAGAGATGAAAATTCGATTACAAGCTGATTTTGAT 459
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 338 TTATCAATGAAGATAGCTTCAGAGAAAGAGACCAAAATCCGATTACAAGCTGATTTTGAT 397
Query 460 AATACAAGGAAGAAGCTTGATAAAGATAGGCTTAGTACAGAGTCTAATGCAAAAGTTCAG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AATACAAGGAAGAAGCTTGATAAAGATAGGCTTAGTACAGAGTCTAATGCAAAAGTTCAG 457
Query 520 ATTCTTAAGTCTCTTTTACCTATTATTGATAGTTTTGAGAAAGCTAAGTTACAGGTTAGA 579
||| | ||| ||||||||| ||||||||||||||||||| ||||||| ||||||||| |
Sbjct 458 ATTATGAAGAGTCTTTTACCAATTATTGATAGTTTTGAGAGAGCTAAGCTACAGGTTAAA 517
Query 580 GTTGATACTGATAAGGAGAAGAAGATTGATACGAGTTATCAAGGGATTTATAGGCAATTT 639
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 518 GTTGATACTGATAAGGAGAAGAAGATCGATACGAGTTATCAGGGGATTTATAGGCAATTT 577
Query 640 GTTGAGGTTTTGAGATATCTTCGTGTTTCGGTTATTGCAACTGTTGGCAAGCCTTTTGAT 699
||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 578 GTTGAGGTTTTGAGACATCTTCGTGTTTCGGCTATTGCAACTGTTGGGAAGCCTTTTGAT 637
Query 700 CCTTTGTTGCACGAGGCTATTTCACGGGAAGAATCTGAGGCGGTTAAAGCAGGGATAATA 759
|||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||
Sbjct 638 CCTTTGTTGCACGAGGCTATATCACGAGAAGAATCTGAAGTGGTTAAAGCAGGGATAATA 697
Query 760 ACCGAGGAGCTGAACAAGGGATTTGTTCTAGGAGATCGTGTTCTGAGACCAGCAAAGGTT 819
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ACCGAGGAGCTGAACCGGGGATTTGTTCTAGGAGATCGTGTTCTGAGACCAGCAAAGGTT 757
Query 820 AAAGTTTCTTTAGGACCCGTCAACAAGAAGACTCCTTCAGCTGCTGAGGAAATAACACCT 879
||||| ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 758 AAAGTCTCTTTAGGACCCGTCAAAAAGAAGACTCCTTCACCTGCTGAGGAGATAACACCT 817
Query 880 TCTGCTTGAGTTCGATGTC 898
|||||||||||||||||||
Sbjct 818 TCTGCTTGAGTTCGATGTC 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38351654502
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5