BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36622.1

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913489 jgi|Araly1|913489|Al_scaffold_0001_3743                    263    1e-69


> Ahg913489 jgi|Araly1|913489|Al_scaffold_0001_3743
Length=231

 Score =  263 bits (142),  Expect = 1e-69
 Identities = 169/182 (93%), Gaps = 2/182 (1%)
 Strand=Plus/Plus

Query  30   ATGAACAAAGTCGTGGTTTACGTACTAGCTTTGAGTATTCTCTTGTTCTTTGGATTACCA  89
            ||||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||
Sbjct  1    ATGAACAAAGTCGTGATTTACGTACTAGCTTTGAGTTTTCTCTTGTTATTTGAATTACCA  60

Query  90   AATACAACACTGGCCCGAGTACAATATGGATCTCC-AGTTTCAAGGAAGGAAATAGGAAA  148
            || ||| || ||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  61   AACACAGCATTGGCCCGAGTACAATATGGATCTCCAAG-TTCAAGGAAGGAAATAGGAAA  119

Query  149  AGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCAAGATTGCTGTAGGAGGCAGTGATTC  208
            |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct  120  AGGGGTTTGGGATCAAAAGGTCTTCAACGAGATCAAGATAAAGGTAGGAGGCAGTGATTC  179

Query  209  AG  210
            ||
Sbjct  180  AG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19688283924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5