BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36640.1

Length=337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473723 jgi|Araly1|473723|fgenesh2_kg.1__3677__AT1G36640.1         342    8e-94


> Ahg473723 jgi|Araly1|473723|fgenesh2_kg.1__3677__AT1G36640.1
Length=282

 Score =  342 bits (185),  Expect = 8e-94
 Identities = 219/235 (93%), Gaps = 4/235 (2%)
 Strand=Plus/Plus

Query  100  AAAATATGTACAAACTCACGCTTTGTATACTAACTCTGAGTTTTCTTTTGTTATCTGGAT  159
            |||||||||||||||||||| || ||||||| | | |||||||||||||||| |||||||
Sbjct  50   AAAATATGTACAAACTCACGGTTCGTATACTGATTTTGAGTTTTCTTTTGTTCTCTGGAT  109

Query  160  TATCAAATACGGTATTAGCCCGAGTACAATATGAATCTCCAAGCCAAAGGAACAAAATAG  219
            ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct  110  TATCAAATACGGTATTAGCCCGAGTACGATATGAATCTCCAAGCCAAAGGAAGAAAATAG  169

Query  220  GAAAAGAAGTTTGGGATCAAACACT-ATTA-AGAGATCTCAAGATCGGTGCATCAGGCAG  277
            |||||||||||||||||||||||||  |||  ||||  ||||||| |||||| |||||||
Sbjct  170  GAAAAGAAGTTTGGGATCAAACACTCTTTACCGAGA--TCAAGATTGGTGCAGCAGGCAG  227

Query  278  TAATTCAGGGAGAGCTCCTTCATGTAATAATAGTTGTAAACCTAACCGGCCTTAA  332
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  228  TAATTCAGGGAGAGCTCCTTCATGTAATAATAGTTGTAAACCTAACCGGCCTTAA  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11942699357


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5