BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36670.1
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175 333 9e-91
> Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175
Length=276
Score = 333 bits (180), Expect = 9e-91
Identities = 231/256 (90%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 21 GGAGAGTAATCATATAAGTGAAGAAC-TTTTGGTTGAGAAAAAATATGACTCAATAAGGG 79
|||||||| |||||||||||||| || |||| || ||| || || ||||||||||||| |
Sbjct 3 GGAGAGTAGTCATATAAGTGAAG-ACTTTTTAGTCGAGGAAGAAGATGACTCAATAAGTG 61
Query 80 AAAACGAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCTAACAACGAGGATG 139
|| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 AAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCCAACAACGAGGATG 121
Query 140 ACGTTGTAACTAAAGAGGCTGCTGCTTTAGAGGCAAATAATGATAATGAGAAGAAAGATG 199
|| || |||| ||||||||||||||||||| ||||||||||||||| | ||||||||||
Sbjct 122 ACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAATCATAAGAAAGATG 181
Query 200 ACATATATATTGGAATGGAGTTCAGTTCTGATCAGATTGCATATATAACTTATAAAAAGT 259
| |||||| |||| |||||||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 182 AAATATATGTTGGTATGGAGTTCAGTTCCGATGAGATTGCACATATAACTTATAAAAAGT 241
Query 260 ATGGAGGCAATCATGG 275
||||||||||||||||
Sbjct 242 ATGGAGGCAATCATGG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23407471038
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5