BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36675.1

Length=807
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949009 jgi|Araly1|949009|scaffold_800896.1                        340    7e-93
  Ahg931292 jgi|Araly1|931292|scaffold_303749.1                        329    2e-89


> Ahg949009 jgi|Araly1|949009|scaffold_800896.1
Length=1072

 Score =  340 bits (184),  Expect = 7e-93
 Identities = 269/310 (87%), Gaps = 5/310 (2%)
 Strand=Plus/Plus

Query  7    TCAGCTATTACAAACCACCGTCCATATCATGGATCGATTATGTCACCGTCGTCTCAAGCA  66
            |||||| || ||||| | |||||||||||||||||||| |||||    || |||||||||
Sbjct  174  TCAGCTGTTCCAAACTATCGTCCATATCATGGATCGATGATGTCGTATTCATCTCAAGCA  233

Query  67   CCCTCTTATTCTTCTACTCCAATGGGTAATGAAACTAATACGAA-TGTTGGAGCAACTGA  125
            ||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||
Sbjct  234  CCCTCTTATTCTTCTGCTCCAATGGGTAATGAAACTAATAC-AAGTGTTGGAACAACTGA  292

Query  126  ATTCCCGGAATTTTCTACACAAATGGCTCTTGGTGTTATGAGTGGTGTTCACGAAACTAT  185
            |||||| |||||||||||||||||||||||||||| |||||| |||||||| ||| | ||
Sbjct  293  ATTCCCCGAATTTTCTACACAAATGGCTCTTGGTGCTATGAGCGGTGTTCATGAAGCCAT  352

Query  186  TCCAAATGAAGAGGATTTAACTTGTAATCATTCGAGAAGCTCCAAATGGACCACTGATCA  245
            ||||||||||||||||| ||||  |  || | |||||||||  |||||||||||||| ||
Sbjct  353  TCCAAATGAAGAGGATTCAACTCCTGCTCGTCCGAGAAGCTTTAAATGGACCACTGAACA  412

Query  246  AAATT-TGGTGCTACTGAGTAGGTGGATTAAATATG-AACAAATAGTATCGTTGGTAGAA  303
            || || |||||||||||| | ||||||||||||||| |||| ||||  |  |||| ||||
Sbjct  413  AA-TTATGGTGCTACTGAATGGGTGGATTAAATATGGAACATATAGCGTTTTTGGCAGAA  471

Query  304  ACCAAAAAGG  313
            ||||||||||
Sbjct  472  ACCAAAAAGG  481


> Ahg931292 jgi|Araly1|931292|scaffold_303749.1
Length=979

 Score =  329 bits (178),  Expect = 2e-89
 Identities = 255/292 (87%), Gaps = 6/292 (2%)
 Strand=Plus/Plus

Query  1    ATGTCGTCAGCTATTACAAACCACCGTCCATATCATGGATCGATTATGTCACCGTCGTCT  60
            ||| |||||||| || ||||| | |||||||||||||||||||| |||||    || |||
Sbjct  168  ATGCCGTCAGCTGTTCCAAACTATCGTCCATATCATGGATCGATGATGTCGTATTCATCT  227

Query  61   CAAGCACCCTCTTATTCTTCTACTCCAATGGGTAATGAAACTAATACGAA-TGTTGGAGC  119
            |||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct  228  CAAGCACCCTGTTATTCTTCTGCTCCAATGGGTAATGAAACTAATAC-AAGTGTTGGAGC  286

Query  120  AACTGAA-TTCCCGGAATTTTCTACACAAATGGCTCTTGGTGTTATGAGTGGTGTTCACG  178
            || |||| |||| | ||||||||||||||||||||||||||| ||||||| ||||||| |
Sbjct  287  AATTGAAATTCCAG-AATTTTCTACACAAATGGCTCTTGGTGGTATGAGTAGTGTTCATG  345

Query  179  AAACTATTCCAAATGAAGAGGATTTAACTTGTAATCATTCGAGAAGCTCCAAATGGACCA  238
            || | ||||||||||||||||||| ||||  |  || | |||||||||||||||||||||
Sbjct  346  AAGCCATTCCAAATGAAGAGGATTCAACTCCTGCTCGTACGAGAAGCTCCAAATGGACCA  405

Query  239  CTGATCAAAATTTGGTGCTACTGAGTAGGTGGATTAAA-TATG-AACAAATA  288
            |||| ||||||||||||||||||||| ||||||| ||| |||| |||| |||
Sbjct  406  CTGAACAAAATTTGGTGCTACTGAGTGGGTGGATAAAAATATGGAACAGATA  457



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29812121094


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5