BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36732.1
Length=2286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922784 jgi|Araly1|922784|scaffold_104065.1 2019 0.0
Ahg922785 jgi|Araly1|922785|scaffold_104066.1 243 6e-63
> Ahg922784 jgi|Araly1|922784|scaffold_104065.1
Length=1363
Score = 2019 bits (1093), Expect = 0.0
Identities = 1272/1359 (94%), Gaps = 9/1359 (1%)
Strand=Plus/Plus
Query 456 GTTTGTTGAATC-AAGATGGCTTTGCAAAACATTGGTGCCTCCAACCGCGATGATGCCTT 514
|||||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 8 GTTTGTCAAATCGAAAATGGCTTTGCAAAACATTGGTGCTTCCAACCGCGATGATGCCTT 67
Query 515 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 TTATAGGTATAAGATGCCGAGGATGATGACCAAGATTGAAGGTAGAGGTAACGGTATCAA 127
Query 575 GACTAATGTGGTTAACATGGTTGAGATTGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 634
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 128 GACTAATGTGGTCAATATGGTTGAGATCGCTAAGGCCTTGGGGAGACCTGCTGCTTATAC 187
Query 635 TACTAAGTATTTTGGTTGTGAGCTTGGTGCACAGTCTAAGTTTGATGAGAAGAATGGGAC 694
|||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||| ||
Sbjct 188 TACTAAGTATTTTGGTTGTGAGCTTGGTGCGCAGTCCAAATTTGATGAGAAGACTGGAAC 247
Query 695 CTCGCTTGTGAATGGGGCTCATGACACTTCCAAACTTGCAGGA-TTATTGGAGAACTTTA 753
|||||| ||||||||| |||||||||||||||| ||||| ||| || | |||||||||||
Sbjct 248 CTCGCTGGTGAATGGGTCTCATGACACTTCCAAGCTTGCGGGACTTCT-GGAGAACTTTA 306
Query 754 TTAAGAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAGATACTTATCACTA 813
| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 307 TCAAAAAGTATGTTCAGTGTTATGGATGTGGGAATCCTGAAACTGAAATACTCATCACTA 366
Query 814 AGACGCAGATGCTTCAGCTGAAATGTGCGGCTTGTGGGTTTCTCTCGGATGTTGATATGA 873
||||||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct 367 AGACGCAGATGCTTCAGTTGAAATGTGCGGCTTGCGGGTTTATCTCGGATGTCGATATGA 426
Query 874 GGGACAAGCTAACGTCGTTTATTTTGAAGAATCCTCCAGAGCAGAAGAAGTCGTCTAAGG 933
|||||||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 427 GGGACAAGCTCACGTCGTTCATTCTGAAGAATCCTCCAGAGCAAAAGAAGTCGTCTAAGG 486
Query 934 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGACTCAGAGAAGGTGAAGCAGCTGATG 993
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 487 ACAAGAAGTCGATGAGGAGAGCTGAGAAGGAAAGGCTCAAAGAAGGTGAAGCAGCTGATG 546
Query 994 AAGAGATGAGGAAGCTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 1053
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGGAGATGAGGAAACTCAAGAAGGAGGCTGCTAGTAAGAAGAAAGCAGCGACCACGGGTA 606
Query 1054 CTTCGAAAGACAAAGTGTCGAAGAAGAAAGATCATTCTCCACCTCGAAGCCTGTCTGATG 1113
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 607 CTTCGAAAGACAAAGTTTCGAAGAAGAAAGATCATTCCCCACCTCGAAGCCAGTCTGATG 666
Query 1114 AAAATGACCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 1173
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAAATGAGCAAGCAGACAGTGAAGAAGATGATGACGATGTCCAGTGGCAAACAGATACTT 726
Query 1174 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTCAGCGCGGTAACAGCTGAAATGG 1233
||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||
Sbjct 727 CCAGGGAGGCTGCTGAGAAACGTATGAAAGAACAGCTGAGTGCTGTAACAGCTGATATGG 786
Query 1234 TGATGCTGTCTACAGTTGAAGaaaaaaaGCCAGTAGCTGAGGTGAAGAAGGCACCAGAA- 1292
|||||||||||||| |||||||||||||||||| || | |||||||||||| |||||||
Sbjct 787 TGATGCTGTCTACAATTGAAGAAAAAAAGCCAGCAGTTCAGGTGAAGAAGGTACCAGAAG 846
Query 1293 CAAGTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTTGTGAAT 1352
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 847 CA-GTGCATGAGAATGGCAATAGCAAGATCCCTGAAAATGCTCATGAAAAGCTGGTCAAT 905
Query 1353 GAGATAAAGGAGCTTCTGAGCAGTGGTTCATCTCCTACCCAACTCAAAACAGCCCTAGCT 1412
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 906 GAGATAAAGGAGCTTCTGAGCAATGGTTCATCTCCTACACAACTCAAAACAGCCCTAGCT 965
Query 1413 TCAAACTCAGCAAACCCCCAGGAGAAAATGGACGCCTTATTCTCTGCCCTCTTTGGAGGC 1472
|||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 966 TCAAACTCCGCAACCCCCCAGGAGAAAATGGAAGCCCTATTCTCTGCCCTCTTTGGAGGC 1025
Query 1473 ACAGGCAAGGGATTCGCAAAAGAGGTGATCAAGAAGAAGAAATATCTCTTGGCCTTGATG 1532
|||||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 1026 GCAGGCAAGGGATTCGCCAAAGAAGTGATCAAAAAGAAGAAATATCTCGTGGCCTTGATG 1085
Query 1533 ATGATGCAAGAAGAAGCAGGAGCTCCTGC-GCAGATGGGTTTGCTTAATGGAATTGAATC 1591
||||||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||
Sbjct 1086 ATGATGCAAGAAGAAGCAGGAGCTCCT-CAGCAGATGGTTTTGCTTAACGGAATAGAATC 1144
Query 1592 CTTTTGCATGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1651
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTTCTGCACGAAGGCAAGCGCAGAGGCTGCCAAAGAAGTTGCTCTTGTTATCAAAGGTCT 1204
Query 1652 TTACGATGAAGACATTTTGGATGAGGATGTGATTGTTGAATGGTACAATAAAGGTGTCAA 1711
||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1205 TTACGATGAAGACCTTTTGGAAGAGGATGTGATTGTTGAATGGTACAATAAAGGCATTAA 1264
Query 1712 AAGCTCCCCGGTTTTGAAGAACGTGACTCCGTTCATCGAGTGGCTCCAGAATGCTGAGTC 1771
||||||||| || |||||||| || ||||||||||| |||||||||||||| || |||||
Sbjct 1265 AAGCTCCCCTGTGTTGAAGAATGTTACTCCGTTCATTGAGTGGCTCCAGAACGCCGAGTC 1324
Query 1772 TGAGTCCGAGGAAGAGTGATGCTG-TGTTTCTTTTTCTT 1809
|||||||||||||||||||||| | | |||||||| |||
Sbjct 1325 TGAGTCCGAGGAAGAGTGATGCAGCT-TTTCTTTTACTT 1362
> Ahg922785 jgi|Araly1|922785|scaffold_104066.1
Length=233
Score = 243 bits (131), Expect = 6e-63
Identities = 204/235 (87%), Gaps = 22/235 (9%)
Strand=Plus/Plus
Query 243 GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGAGTGTGAAGAATCTTTTATGTCTGAACAGGCTTCTCTCTTTCAATCATCTATCCGG 60
Query 303 CTTTTAGGAGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTAGGGGAGTACTGTCCTATATCTAGGAAAAAGTCCACTCATAAAGTTGGTGGTTTG 120
Query 363 CGTTTTG-AG-----GA-G---------G-A-CATCACGAGCTGTATT--GGATTTCAGT 402
||| ||| | || | | | || |||||||| | || || |||||||
Sbjct 121 CGTCTTGGATCTTTTGAAGCCTTCAATCGCAACAACACGAGCT-T-TTCCGGTTTTCAGT 178
Query 403 TTATGCAACTGAGTGATTATCACTGCCTCTTCTGACATCCCTTGTTTGTTTACGT 457
||||||||| ||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 179 TTATGCAACCGAGTGATTATCACTGTCTCTTCTGACATCCCTCGTCTGTTTACGT 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86083953700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5