BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36880.1
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480300 jgi|Araly1|480300|fgenesh2_kg.3__3001__AT1G42570.1 2141 0.0
Ahg949393 jgi|Araly1|949393|scaffold_801280.1 388 6e-107
Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175 244 1e-63
> Ahg480300 jgi|Araly1|480300|fgenesh2_kg.3__3001__AT1G42570.1
Length=1605
Score = 2141 bits (1159), Expect = 0.0
Identities = 1437/1567 (92%), Gaps = 36/1567 (2%)
Strand=Plus/Plus
Query 331 CAATCACTCGATGT--TTGTAATGCTCATATGACTTGCTACCTTCAGTAGACCGGAAAAT 388
||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 5 CAATCACACGGTGTGGTTGTAATGCTCATATGACTTGCTACCTTCAGAAGACCGGAAAAT 64
Query 389 ATTAGGTTGTATCATTCGAGCC-GAACCACAACCCTGATTTAGTGAA-ACACCTATGAAG 446
|| ||||||| || ||| | || ||| || |||| |||||||||||| || ||||||||
Sbjct 65 ATAAGGTTGTGTCTTTC-AACCAGAATCATAACCATGATTTAGTGAAGACGCCTATGAAA 123
Query 447 CATTTGTTGAAAGAAAATCGGGAATTATCTATCTCTCAAAAACAACATGCAGATGAT--- 503
||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 124 CATTTGTTGAAGGGAAATCGGGTATTATCTATCTCTCAAAAACAACATGCAGATGATGCC 183
Query 504 ---ATGTCAGGGATTTCAGCAAAAGCAACTGTTGAAATGATGAGTAGAGAAGTTGGGGGG 560
|||||||| |||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 184 GAGATGTCAGGAATTTCAGCAAAATCAACTGTTGAAATGATGAGTAGAGAAGTAGGAGGG 243
Query 561 CAAGAAAATCTGGGTTTTTTGAAGAAAGATTATCAAAATTACATATACCGAGAAAGAGAA 620
||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||
Sbjct 244 TAAGTAAATCTGGGTTTTTTGAAGAAGGATTATCAAAATTACATATACC--GAAAGCGAA 301
Query 621 TGGCAAAAATGGAAAAGGGAGATGCTGGAGCTGTTTTGGAATACTTTCAGAAAAAAGGAG 680
|||||||||||||||||||||||| ||||||||||||||| ||||||||| || |
Sbjct 302 TGGCAAAAATGGAAAAGGGAGATGTTGGAGCTGTTTTGGAGTACTTTCAG----AA--A- 354
Query 681 GGTAATTCGTCttttttttATTCAATGCAACTTGATGAGGATGATATGATCACTAATATA 740
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ---AA------TTTTTTTTATTCAATGCAACTTGATGAGGATGATATGATCACTAATATC 405
Query 741 TTCTGGGCAGATGATCGGTCAATAAGTGATTACAATCTTTTTGGAGATGTCATTTGCTTT 800
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 406 TTCTGGGCAGATGATCGGTCTATAAGTGATTACAATCTTTTTGGAGATGTCGTTTGCTTT 465
Query 801 GACACAACTTATAAGACCAATGAATATGATAGACCATTTGCTCCATTTGTCGTG-GTCAA 859
||||||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||||
Sbjct 466 GACACAACTTATAAGACCAATGACTATGAAAGACCCTTTGCTCCATTTGTCG-GAGTCAA 524
Query 860 TCATCACAAGCAAACAGTTGTGTTTGGTGCTGCTCTCTTATATGAGGAAACCAGTGAGTC 919
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 525 TCATCATAAGCAAACTGTTGTGTTTGGTGCTGCTCTCTTATATGATGAAACCACTGAGTC 584
Query 920 ATATAAGTGGCTTTTCGAGACTTTTCTTGGAGCAATGTCTGGAAAACAACCAAAAACAAT 979
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 585 ATATAAGTGGCTTTTCGAGACTTTTCTTGGAGCAATGTCTGGAAAACAACCTGAAACAAT 644
Query 980 TCTTACAGACCAATGTGCAGCAATGGCGAATGCAATAGTAAAGGTATTCCCTGATACAAA 1039
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 645 TCTTACAGACCAATGTGCAGCAATGGCGAATGCAATAGTGAAGGTATTTCCTGATACAAA 704
Query 1040 ACATAGATTATGTGTTTGGCATATTTACCAAAATGCTGCAAAGAAATTGAGTCATGTATT 1099
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 705 GCATAGATTATGTGTTTGGCATATTTACCAAAATGCTGCAAAGAAGTTGAGTCATGTATT 764
Query 1100 TCATTGAGCAGAATAATTTGTCATGGATTTTAGTAAGTGTGTATATGACCATGAGGAAGA 1159
|||| |||||||| |||||| |||| | |||||||| |||||||||||||||||||||||
Sbjct 765 TCATGGAGCAGAACAATTTGCCATGAACTTTAGTAAATGTGTATATGACCATGAGGAAGA 824
Query 1160 AGAATATTGGTTATTGGCATGGAGTAATATGCTCCAGAAGCATAACTTGACAGAGGATAA 1219
|||| | |||||||||||||||||||||||||||||| ||||||| ||||| | ||||||
Sbjct 825 AGAAGAATGGTTATTGGCATGGAGTAATATGCTCCAGTAGCATAAATTGACGGGGGATAA 884
Query 1220 ATGGTTGAAGAATTTGTTTGAGCTGAGAGAAAAATGGGCAATGGTATATGGACGTCATAC 1279
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATGGTTGAAGAATTTATTTGAGCTGAGAGAAAAATGGGCAATGGTATATGGACGTCATAC 944
Query 1280 TTTTACAGCATATATGGTGAGCACACAACGTAGTGAAAGTATGAATAATATTTTGAAAAA 1339
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 945 TTTTACAGCAGATATGGTGAGCACACAGCGTAGTGAAAGTATGAATAATATTTTGAAAAA 1004
Query 1340 A-TACTTGAAGCATAGTTATAACTTGTTGCGCTTCTTTGAACACTACGAGAGAGTGTTGG 1398
| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1005 AATACTTGAAGCATAGTTATAACTTGTTGTGCTTCTTTGAACACTATGAGAGAGTGTTGG 1064
Query 1399 AGGATCGACGATATAAGGAATTAGTTGCTGATTTCAATATGATGCATACCTTGCCGGTAT 1458
|||||| ||||||||| |||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1065 AGGATCAACGATATAAAGAATTAGTTGCTGACTTCAATATGATGCATACCTCGCCGGTAT 1124
Query 1459 TATGTGCTACTGTAGAGATGTTGCAACATGCAGAGGAAGTGTATACACCCGAAATTTTTA 1518
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1125 TATGTGCTACTGTAGAGATGTTGCAACATGCAGAGGAAGTGTATACACCAGAAGTTTTTA 1184
Query 1519 GCTTGTTCCAAAAACAATACATAGTTATTGGTGATTATGTTGCCAACAAGGTTAGTAAGT 1578
|||||||||| || |||| ||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1185 GCTTGTTCCAGAAGCAATTCATAGTTATCGGTGATTATGTTGCCAAAAAGGTTAGTAAGT 1244
Query 1579 CTGAGATGGTATATGAACATAAAGTATCTTATCGTGGTGTAGCACAAGAGCATTTGGTTA 1638
|||||||||| |||||| | || ||||||||||| |||||||||| ||||||||||||||
Sbjct 1245 CTGAGATGGTGTATGAATACAATGTATCTTATCGAGGTGTAGCACGAGAGCATTTGGTTA 1304
Query 1639 ATTATGATGTTGCAAACGAGACGATATGTTGCAGTTGCATGAAGTTTAGTTTTGCCGGGA 1698
||||||||| |||||||||||| ||| ||| |||||| ||||||| |||||| ||||
Sbjct 1305 ATTATGATGCTGCAAACGAGACAATACATTGTGGTTGCAAGAAGTTTTCTTTTGCTGGGA 1364
Query 1699 TTTTATGTCTTCATGCATTGAAAATGTTGGACAAGAAGAATGTTAGAAGAATCCCATCTA 1758
||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1365 TTTTATGTCGTCATGCATTGAAAGTGTTGGACAAGAAGAATGTTAGAAGAATTCCATCTA 1424
Query 1759 ACT-ACATTCTAAATCGATGGAGTAAAGAGGCAAAAGCACGAAAAATATCTTATTATCAT 1817
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1425 -CTTACATTCTAAATCGATGGAGTAAAGAGGCAAAAGCACGAAACATATCTTATTATCAT 1483
Query 1818 TCAGAGCCACGTAATGAAACAGTCAAAG-AATCGATTGGAAAGCGATATAGACATCTATG 1876
|||||| ||| ||||||||||||||| | |||||||||||||||||||||| ||| ||||
Sbjct 1484 TCAGAGTCACCTAATGAAACAGTCAA-GCAATCGATTGGAAAGCGATATAGCCATATATG 1542
Query 1877 TCGTACT 1883
|| ||||
Sbjct 1543 TCATACT 1549
> Ahg949393 jgi|Araly1|949393|scaffold_801280.1
Length=586
Score = 388 bits (210), Expect = 6e-107
Identities = 322/376 (86%), Gaps = 8/376 (2%)
Strand=Plus/Plus
Query 4 TCAATAAGTGAAAACAAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCTAAC 63
|||||||||||| || ||||||| | | ||||||||||||||||||||| ||||| |||
Sbjct 120 TCAATAAGTGAAGACGAAGCTTCAGTTAGTGAATTTGAAGAAGAAGATGACATAGCCAAC 179
Query 64 GACGAGGATGATGTTGTAACTGAACAGGTTGCTACTTTTGAAGCAAATAATGAT-AATGA 122
| || ||| ||||| ||||||| |||||| | |||| |||| ||| || | | |||||
Sbjct 180 AAAGACGATTATGTTCAAACTGAAGAGGTTGTTGCTTTAGAAGAAAACAAAG-TGAATGA 238
Query 123 GAAGAAAGATAAAATATATATATTGGAATAGAGTTCAGTTCTGATGAGATTGCATATATA 182
||| |||||| || ||| ||||||||| ||||| |||||||||||| ||||||||||
Sbjct 239 GAAAAAAGAT-GAA-CTATGTATTGGAATGGAGTTTAGTTCTGATGAGGCTGCATATATA 296
Query 183 ACTTATACA-AAGTATGGAGGAAATCGTGGTTTCAATATAAGAAAACAACGGAGGATGaa 241
|||||| | |||||||||| |||| ||||||||| |||| ||||||||||||| |||
Sbjct 297 GCTTATA-AGCAGTATGGAGGCAATCATGGTTTCAACGTAAGGAAACAACGGAGGACGAA 355
Query 242 aaaaaaaGGGAAGGTAGTAAGGCTTCTTTATGTTTGCTCAAAACAAGGGTATAGGAAAGA 301
|||| ||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 356 AAAACAAGAGAAGGTAGTAAGGCTTCTTTATGTCTGCTCAAAACAGGGGTATAGGAAAGA 415
Query 302 ACCCAAGGTCATAAAATCATATTCACAAGCAATCACTCGATGT--TTGTAATGCTCATAT 359
||| |||||||||||||| ||||||||| ||||||| || ||| |||||||||||||||
Sbjct 416 ACCTAAGGTCATAAAATCTTATTCACAACCAATCACACGGTGTGGTTGTAATGCTCATAT 475
Query 360 GACTTGCTACCTTCAG 375
||||||||||||||||
Sbjct 476 GACTTGCTACCTTCAG 491
> Ahg906047 jgi|Araly1|906047|Al_scaffold_0003_3175
Length=276
Score = 244 bits (132), Expect = 1e-63
Identities = 185/211 (88%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 1 GACTCAATAAGTGAAAACAAAGCTTCGGCCAATGAATTTGAAGAAGAAGATGAAATAGCT 60
||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 49 GACTCAATAAGTGAAGACGAAGCTTCGGTCAATGAATTTGAAGAAGAAGATGAAATAGCC 108
Query 61 AACGACGAGGATGATGTTGTAACTGAACAGGTTGCTACTTTTGAAGCAAATAATGATAAT 120
||| |||||||||| || ||||||| ||| |||| |||| ||||||||||||||||||
Sbjct 109 AACAACGAGGATGACCTTCAAACTGAAGAGGCTGCTGCTTTAGAAGCAAATAATGATAAT 168
Query 121 GAGAAGAAAGATAAAATATATATATTGGAATAGAGTTCAGTTCTGATGAGATTGCATATA 180
| ||||||||| |||||||| | | || || ||||||||||| |||||||||||| |||
Sbjct 169 CATAAGAAAGATGAAATATATGT-T-GGTATGGAGTTCAGTTCCGATGAGATTGCACATA 226
Query 181 TAACTTATACAAAGTATGGAGGAAATCGTGG 211
||||||||| |||||||||||| |||| |||
Sbjct 227 TAACTTATAAAAAGTATGGAGGCAATCATGG 257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5