BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36920.1
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352148 jgi|Araly1|352148|fgenesh1_pg.C_scaffold_6002741 713 0.0
Ahg482140 jgi|Araly1|482140|fgenesh2_kg.4__1200__AT1G36920.1 486 6e-137
Ahg473576 jgi|Araly1|473576|fgenesh2_kg.1__3530__AT1G36920.1 486 6e-137
Ahg944791 jgi|Araly1|944791|scaffold_701020.1 239 2e-62
> Ahg352148 jgi|Araly1|352148|fgenesh1_pg.C_scaffold_6002741
Length=996
Score = 713 bits (386), Expect = 0.0
Identities = 405/414 (98%), Gaps = 1/414 (0%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 519
Query 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 579
Query 121 GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT 180
|||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct 580 GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT 638
Query 181 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 698
Query 241 TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGCGTTGTGCAACGAAGA 300
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 699 TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGCGTTGTGCAACGAAGA 758
Query 301 ACCAAGATTAGCTATTACTGAAATAAAATCTTCAAAGTCGGCTCATATTTCCAAACAGTC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 759 ACCAAGATTAGCTATTACTGAAATAATATCTTCAAAGTCGGCTCATATTTCCAAACAGTC 818
Query 361 ATTTCACTTATCTGAAAGAAAAACAATCATTGAACTCATGGAAACTAACCAAGT 414
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 819 ATTTCACTTATCTGAAAGAAAAACAATCATCGAACTCATGGAAACTAACCAAGT 872
> Ahg482140 jgi|Araly1|482140|fgenesh2_kg.4__1200__AT1G36920.1
Length=690
Score = 486 bits (263), Expect = 6e-137
Identities = 278/285 (98%), Gaps = 1/285 (0%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
Query 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
Query 121 GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT 180
|||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct 121 GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT 179
Query 181 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 239
Query 241 TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGC 285
||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 240 TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGC 284
> Ahg473576 jgi|Araly1|473576|fgenesh2_kg.1__3530__AT1G36920.1
Length=861
Score = 486 bits (263), Expect = 6e-137
Identities = 280/288 (97%), Gaps = 1/288 (0%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
Query 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
Query 121 GTCTACTCTAATATTAAATCTCAACCATCAGGTCCCGTTTTTTCTTCTTGGAAGTTTGAT 180
|||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||
Sbjct 121 GTCTACTCTAATATTAAATCCCAACCATCAGGTCCTGTTGTTT-TTCTTGGAAGTTTGAT 179
Query 181 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTCAAAGCTCAAAATTTACAACAAAAGC 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GAAGACTTTGCTATATCAAGGTAAAGGCACAGTTGAAAGCTCAAAATTTACAACAAAAGC 239
Query 241 TTATATCCATTCTCCACTACCAGAGATTCTTCGGTTTCAAGAAGCGTT 288
||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 240 TTATATCAATTCTCCACTACCAGAGATTCTTCAGTTTCAAGAAGCGTT 287
> Ahg944791 jgi|Araly1|944791|scaffold_701020.1
Length=713
Score = 239 bits (129), Expect = 2e-62
Identities = 136/139 (98%), Gaps = 1/139 (1%)
Strand=Plus/Plus
Query 1 ATGAATGAAGTTAAGAGTCTCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATGAATGAAGTTAAGAGTATCACTACTGCTGAAGGTCCAACAAAGTTGCTTAATCTTCAG 522
Query 61 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CTTAAAGATCTTGGGGATTCACTTATTGATGTTGCCTTATGGGGTAAACTTGCAGAAGAT 582
Query 121 GTCTACTCTAATATT-AAA 138
|||||||||||| || |||
Sbjct 583 GTCTACTCTAATGTTGAAA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20947418361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5