BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36922.1
Length=503
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473576 jgi|Araly1|473576|fgenesh2_kg.1__3530__AT1G36920.1 346 9e-95
Ahg482140 jgi|Araly1|482140|fgenesh2_kg.4__1200__AT1G36920.1 335 2e-91
Ahg916386 jgi|Araly1|916386|Al_scaffold_0008_1137 204 6e-52
Ahg887987 jgi|Araly1|887987|Al_scaffold_0877_1 124 5e-28
> Ahg473576 jgi|Araly1|473576|fgenesh2_kg.1__3530__AT1G36920.1
Length=861
Score = 346 bits (187), Expect = 9e-95
Identities = 216/230 (94%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 77 GAACTGCTTGATCTAGGTGGTCGTAATTATGTTTTCAAGATCATGGTTAAACATGAGGCA 136
|||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||
Sbjct 463 GAACTGCTTGATCTAGACGGTCGTAATTATGTTTTCAAAATCATGGTTAAAGATGAGGCA 522
Query 137 AAGCATAACCAATCTTCTACATACAAAATGATAAGTCTTACTGATGTTCTCAATGTTATT 196
||| ||||||||||||||||||||||| | ||||||||||||||||||| | ||||||||
Sbjct 523 AAGTATAACCAATCTTCTACATACAAAGTTATAAGTCTTACTGATGTTCCCGATGTTATT 582
Query 197 CAAAGTTTCTTTGAAAGTGCTTCTACTTTGAATGATATTGAACAAGAAATAATCACTGTC 256
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 583 CAAAGTTTCTCTGAAAGTGCTTCTACTTTGAATGCTATTGAACAAGAAATAATCACTGTC 642
Query 257 TCTGGAAATTCAGTGGGGACTTCAATCGGGACCACAACTCAGGTTGTAAA 306
||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 643 TCTGGAAATTCAGTGGGGACTTCAATCGGGACCTCAACTCAGGCTG-AAA 691
Score = 200 bits (108), Expect = 8e-51
Identities = 128/138 (93%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 363 CAGGCTGAAATTAACTTTGTTGATGTGGATAACTTAGACAACAATGAAGACAACGCTTAT 422
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 682 CAGGCTGAAATTAACTTTGTTGATGTGGAAAAATTAGACAACAATGAAGACAACGCTTAT 741
Query 423 TACATTTCCACGCCAAAGCCTATAACTAAAAGATTTTTGGCAACATCTAAACATGTTCAA 482
|| ||||||| |||||||||| | ||||||||| ||||||||||||||| ||||||||
Sbjct 742 AACGTTTCCACTCCAAAGCCTACAGCTAAAAGATCCTTGGCAACATCTAAAGATGTTCAA 801
Query 483 CAATCATCAACGAAGCCT 500
||||||||||||||||||
Sbjct 802 CAATCATCAACGAAGCCT 819
> Ahg482140 jgi|Araly1|482140|fgenesh2_kg.4__1200__AT1G36920.1
Length=690
Score = 335 bits (181), Expect = 2e-91
Identities = 212/227 (93%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 80 CTGCTTGATCTAGGTGGTCGTAATTATGTTTTCAAGATCATGGTTAAACATGAGGCAAAG 139
||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 295 CTGCTTGATCTAGACGGTCGTAATTATGTTTTCAAAATCATGGTTAAAGATGAGGCAAAG 354
Query 140 CATAACCAATCTTCTACATACAAAATGATAAGTCTTACTGATGTTCTCAATGTTATTCAA 199
||||||||||||||||||||||| | ||||||||||||||||||| | |||||||||||
Sbjct 355 TATAACCAATCTTCTACATACAAAGTTATAAGTCTTACTGATGTTCCCGATGTTATTCAA 414
Query 200 AGTTTCTTTGAAAGTGCTTCTACTTTGAATGATATTGAACAAGAAATAATCACTGTCTCT 259
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 415 AGTTTCTCTGAAAGTGCTTATACTTTGAATGCTATTGAACAAGAAATAATCACTGTCTCT 474
Query 260 GGAAATTCAGTGGGGACTTCAATCGGGACCACAACTCAGGTTGTAAA 306
|||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 475 GGAAATTCAGTGGGGACTTCAATCGGGACCTCAACTCAGGCTG-AAA 520
> Ahg916386 jgi|Araly1|916386|Al_scaffold_0008_1137
Length=342
Score = 204 bits (110), Expect = 6e-52
Identities = 128/137 (93%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 364 AGGCTGAAATTAACTTTGTTGATGTGGATAACTTAGACAACAATGAAGACAACGCTTATT 423
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 167 AGGCTGAAATTAACTTTGTTGATGTGGAAAAATTAGACAACAATGAAGACAACGCTTATA 226
Query 424 ACATTTCCACGCCAAAGCCTATAACTAAAAGATTTTTGGCAACATCTAAACATGTTCAAC 483
|| ||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 227 ACGTTTCCACTCCAAAGCCTACAACTAAAAGATCCTTGGCAACATCTAAAGATGTTCAAC 286
Query 484 AATCATCAACGAAGCCT 500
|||||||||||||||||
Sbjct 287 AATCATCAACGAAGCCT 303
> Ahg887987 jgi|Araly1|887987|Al_scaffold_0877_1
Length=252
Score = 124 bits (67), Expect = 5e-28
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 227 AATGATATTGAACAAGAAATAATCACTGTCTCTGGAAATTCAGTGGGGACTTCAATCGGG 286
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATGCTATTGAACAAGAAATAATCACTGTCTCTGGAAATTCAGTGGGGACTTCAATCGGG 60
Query 287 ACCACAACTCAGGTTG 302
||| ||||||| ||||
Sbjct 61 ACCTCAACTCAAGTTG 76
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18276527131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5