BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36925.1
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494982 jgi|Araly1|494982|fgenesh2_kg.8__798__AT1G36925.1 750 0.0
Ahg916489 jgi|Araly1|916489|Al_scaffold_0008_1240 514 3e-145
Ahg952549 jgi|Araly1|952549|scaffold_87700001.1 228 4e-59
> Ahg494982 jgi|Araly1|494982|fgenesh2_kg.8__798__AT1G36925.1
Length=485
Score = 750 bits (406), Expect = 0.0
Identities = 459/485 (95%), Gaps = 1/485 (0%)
Strand=Plus/Plus
Query 40 ATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATAAAGAAAACGTT 99
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1 ATGGCGATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATACAGAAAACATT 60
Query 100 CCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAACCAAAGAGAGTTTCACCTAAT 159
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 61 CCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAACCAAACAGAGTTTCACCTAAT 120
Query 160 AGCTTGAGTGATATTACAAATGAATGTGAATCTCCAAGGATAAAACGGATGTGTGTTATA 219
||||||||||||||||||||||||||||||||||||||||| ||||| ||| || |||||
Sbjct 121 AGCTTGAGTGATATTACAAATGAATGTGAATCTCCAAGGATGAAACGAATGCGTATTATA 180
Query 220 AAGGAGACTAAAGAGAAAAGAAAGAAAGGAGAATCATCTCCAAGTACTAACTTGGACCAA 279
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGAGACGAAAGATAAAAGAAAGAAAGGAGAATCATCTCCAAGTACTAACTTGGACCAA 240
Query 280 AAGTTGGACGAGACGACACAGAACGGCAAGGGCAAGGGCAACAGATTTCCATGTACTGCA 339
|| ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 241 AACTTGGACGAGACGACACAGAACGGCAAGAGCAATGGCAATGGATTTCCATGTACTGCA 300
Query 340 ACAAGTAGAAGGAAAACAAACGTGCATAAGGAACCATATATGCAAGAATCAAGACAAGAT 399
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCAAGTAGGAGGAAAACAAACGTGCATAAGGAACCATATATGCAAGAATCAAGACATGAT 360
Query 400 AATTACAAAGAAGCTCCATCTAAAGACCATGCATCATCGTCACGTTCACATAATTCACTA 459
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AATCACAAAGAAGCTCCATCTAAAGACCATGCATCATCCTCACGTTCACATAATTCACTA 420
Query 460 TATAACACTGACGAGTATGATGACAATGGGGATGCA-TCTACAACTGTGAACATTGTGGA 518
|||||| |||| |||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 421 TATAACTCTGAAGAGTATGATGACAATGGGGATGCAATCTACAACTGTGAACACTGTGGA 480
Query 519 GCTTT 523
|||||
Sbjct 481 GCTTT 485
> Ahg916489 jgi|Araly1|916489|Al_scaffold_0008_1240
Length=720
Score = 514 bits (278), Expect = 3e-145
Identities = 406/461 (88%), Gaps = 36/461 (8%)
Strand=Plus/Plus
Query 40 ATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCAGGATAAAGAAAACGTT 99
||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||
Sbjct 1 ATGGCGATTCGTTCCAAGAAGAAAAACAATCAAACAGAAAATCA-G-----GAAAACATT 54
Query 100 CCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAACCAAAGAGAGTTTCACCTAAT 159
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 55 CCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAACCAAACAGAGTTTCACCTAAT 114
Query 160 AGCTTGAGTGATATTACAAATG-A-A-TGTGAATCTCCAAGGATAAAACGGATGTGTGTT 216
|||||||||||||||||||||| | | ||||||||||||||||| ||||| ||| || ||
Sbjct 115 AGCTTGAGTGATATTACAAATGTAGAATGTGAATCTCCAAGGATGAAACGAATGCGTATT 174
Query 217 ATAAAGGAGACTAAAGAGAAAAGAAAGAAAGGAGAATCATCT-C--C---AAGTACTAAC 270
||||||||||| ||||| |||||||||||||||||||||||| | | ||||||||||
Sbjct 175 ATAAAGGAGACGAAAGATAAAAGAAAGAAAGGAGAATCATCTTCAGCTCCAAGTACTAAC 234
Query 271 TTGGACCAAAAGTTGGACGAGACGACACAGAACG--G-C-A-A-G-----G---G-CAAG 315
||||||||||| |||||||||||||||| ||||| | | | | | | | ||||
Sbjct 235 TTGGACCAAAACTTGGACGAGACGACACCGAACGTTGACGAGACGACACAGAACGGCAAG 294
Query 316 GGCAA---CA--G-ATTTCCATGTACTGCAACAAGTAGAAGGAAAACAAACGTGCATAAG 369
||||| || | |||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 295 GGCAATGGCAATGGATTTCCATGTACTGCAGCAAGTAGGAGGAAAACAAACGTGCATAAG 354
Query 370 GAACCATATATGCAAGAATCAAGACAAGATAATTACAAAGAAGCTCCATCTAAAGACCAT 429
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 355 GAACCATATATGCAAGAATCAAGACATGATAATCACAAAGAAGCTCCATCTAAAGACCAT 414
Query 430 GCATCATCGTCACGTTCACATAATTCACTATATAACACTGA 470
|||||||| ||||||||||||||||||||||||||| ||||
Sbjct 415 GCATCATCCTCACGTTCACATAATTCACTATATAACTCTGA 455
> Ahg952549 jgi|Araly1|952549|scaffold_87700001.1
Length=193
Score = 228 bits (123), Expect = 4e-59
Identities = 151/163 (93%), Gaps = 7/163 (4%)
Strand=Plus/Plus
Query 19 AAGAAAAGAAGGGTGGAGAGGATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACAGAA 78
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AAG-AAAGAAGGGTGGAGAGGATGGCTATTCGTTCCAAGAAGAAAAACAATCAAACATAA 59
Query 79 AATCAGGATAAAGAAAACGTTCCTCCTAGTTCTGAAGCTAACTCCATATCACCAATGCAA 138
|||||||| ||| | ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 60 AATCAGGA-AAACA-----TTCCTCCTAATTCTGAAGCTAACCCCATATCACCAATGCAA 113
Query 139 CCAAAGAGAGTTTCACCTAATAGCTTGAGTGATATTACAAATG 181
||||| |||||||||||||||||||||||||||||||||||||
Sbjct 114 CCAAACAGAGTTTCACCTAATAGCTTGAGTGATATTACAAATG 156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19115950089
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5