BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36940.2

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913493 jgi|Araly1|913493|Al_scaffold_0001_3747                    806    0.0  


> Ahg913493 jgi|Araly1|913493|Al_scaffold_0001_3747
Length=534

 Score =  806 bits (436),  Expect = 0.0
 Identities = 506/538 (94%), Gaps = 11/538 (2%)
 Strand=Plus/Plus

Query  293  ATGATGGAGACGAGACAAAACAGTGTTCAGTTCCAAAGACCAACTTTCTTACCAATGTTA  352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGATGGAGACGAGACAAAACAGTGTTCAGTTCCAAAGACCAACTTTCTTACCAATGTTA  60

Query  353  TGTTCAAGACCTTCCATCAAGAACGTGACCCTCCCGGCTAAATCACATCAAGATGACTCA  412
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  61   TGTTCAAGACCTTCCATCAAGAACGTGACCCTCCCAGCTAAATCACATCAAGAAGACTCT  120

Query  413  TACCAACAAGCCGATCCTTTATCTCCCAAAATCAGCTGCATTGGTCAAGTCAAACGTAGC  472
            |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  121  TACCAACAAGCCGATCCTTTGTCCCCCAAAATCAGCTGCATTGGTCAAGTCAAACGTAGC  180

Query  473  AACAAGATCACCGGCTTCCccaccaccaccaccacctccacctccatcaccCCCGTCGCT  532
            |||||||||  ||||||     || |||||||||| |||| |||||||||||||| | ||
Sbjct  181  AACAAGATCGTCGGCTT-----CC-CCACCACCACTTCCATCTCCATCACCCCCGCCTCT  234

Query  533  CAGCACCGTTACTTCAAGCTTAAACGTCT-TTTCTCCGGCAAGAATCTCTCTTTCTCCGC  591
            || |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  235  CATCACCGTTACTTCAAGCTTAAACGTCTCTTT-TCCGGCAAGAATCTCTCTTTCTCCGC  293

Query  592  TCCCACTACCACCACTACCAGGACTAGTCGTGGAAGAATAAGAAAGGAGGAGTTTGGTAA  651
            ||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct  294  TCCCACTACCACCACAACCAGAACTAGTCGAGGAAGAATCAGAAAGGAGGAGTTTGGTAA  353

Query  652  CAAAAAGATTGATGTTATCGACGTTGCTGAATTGGACCCACCTTTGCCGGTGGTTAAAAA  711
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  CAAAAAGATTGCTGTTATCGACGTTGCTGAATTGGACCCACCTTTGCCGGTGGTTAAAAA  413

Query  712  GACACACGACGGTGGCGCCGGAGATAAAGCGGCGGAGAATCTTTGGAAGAGGAGATCTGG  771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  GACACACGACGGTGGCGCCGGAGATAAAGCGGCGGAGAATCTTTGGAAGAGGAGATCTGG  473

Query  772  TGGT--T-GTCAACTACGGAGTTTGCAGATTCAAACCAATGGAGTTCATCAGCTGAAA  826
            ||||  | ||||||| |||||||||||||||||| ||||||||| ||| |||||||||
Sbjct  474  TGGTAGTTGTCAACTCCGGAGTTTGCAGATTCAACCCAATGGAGCTCACCAGCTGAAA  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37856056581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5