BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G36970.1 Length=1320 Score E Sequences producing significant alignments: (Bits) Value Ahg897022 jgi|Araly1|897022|Al_scaffold_0005_988 265 7e-70 Ahg897019 jgi|Araly1|897019|Al_scaffold_0005_985 265 7e-70 Ahg931042 jgi|Araly1|931042|scaffold_303499.1 239 4e-62 > Ahg897022 jgi|Araly1|897022|Al_scaffold_0005_988 Length=1902 Score = 265 bits (143), Expect = 7e-70 Identities = 275/337 (82%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508 |||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| || Sbjct 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652 Query 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568 ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| Sbjct 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712 Query 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625 |||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | | Sbjct 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769 Query 626 CCAGACAGTCAACTAGTCCTCCATTTA-AGAAAGTACGCCTAGCACTTAACCACCACACA 684 | ||||||||| || ||||||||| | | ||| ||| |||| ||| |||| | || Sbjct 770 CTAGACAGTCATCTTGTCCTCCATCCAGAAAAA-TACATAAAGCAGGTAAACACC-C-CA 826 Query 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741 | | ||||||||||||||| || ||| |||| || ||| ||||||| | |||||||||| Sbjct 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885 Query 742 TCA-GAACCATTAACTTCATTGCACGAGGGAGACAAT 777 ||| | |||||||||||| |||| |||| ||||||| Sbjct 886 TCAAGT-CCATTAACTTCAATGCATGAGGAAGACAAT 921 > Ahg897019 jgi|Araly1|897019|Al_scaffold_0005_985 Length=1902 Score = 265 bits (143), Expect = 7e-70 Identities = 275/337 (82%), Gaps = 16/337 (5%) Strand=Plus/Plus Query 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508 |||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| || Sbjct 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652 Query 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568 ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||| Sbjct 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712 Query 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625 |||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | | Sbjct 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769 Query 626 CCAGACAGTCAACTAGTCCTCCATTTA-AGAAAGTACGCCTAGCACTTAACCACCACACA 684 | ||||||||| || ||||||||| | | ||| ||| |||| ||| |||| | || Sbjct 770 CTAGACAGTCATCTTGTCCTCCATCCAGAAAAA-TACATAAAGCAGGTAAACACC-C-CA 826 Query 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741 | | ||||||||||||||| || ||| |||| || ||| ||||||| | |||||||||| Sbjct 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885 Query 742 TCA-GAACCATTAACTTCATTGCACGAGGGAGACAAT 777 ||| | |||||||||||| |||| |||| ||||||| Sbjct 886 TCAAGT-CCATTAACTTCAATGCATGAGGAAGACAAT 921 > Ahg931042 jgi|Araly1|931042|scaffold_303499.1 Length=1513 Score = 239 bits (129), Expect = 4e-62 Identities = 238/288 (83%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 500 CTGTAAAACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTC 559 |||||| |||||||||||||||||||||||||||||||||| |||||||| | ||||||| Sbjct 298 CTGTAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTC 357 Query 560 TGAAAAAGATCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT- 617 |||||||||| |||||| ||| |||| | || || ||| ||||||| || ||||| || Sbjct 358 TGAAAAAGATTAAGGCCCTGAGATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATT 415 Query 618 CTC-CAGGTCCAGACAGTCAACTAGTCCTCCATTTAAGAAA-GTACGCCTAGCA-CTTAA 674 ||| | | || |||||||||||| ||||||||| |||||| |||| |||| || || Sbjct 416 CTCTC-GCTCTAGACAGTCAACTTGTCCTCCATC-AAGAAAAGTACATAAAGCAGCTAAA 473 Query 675 CCACCACACAT-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC- 731 | ||| | ||| | ||||||||||||||| || ||| |||| |||||| ||||||| | Sbjct 474 C-ACC-C-CATTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATTCTCAAAACATC-CG 529 Query 732 AACTCCCCCTTCA-GAACCATTAACTTCATTGCACGAGGGAGACAATG 778 ||||||||||||| | |||||||||||| |||| |||| |||||||| Sbjct 530 AACTCCCCCTTCAAGT-CCATTAACTTCAATGCATGAGGAAGACAATG 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49369177515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5