BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G36970.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897022 jgi|Araly1|897022|Al_scaffold_0005_988 265 7e-70
Ahg897019 jgi|Araly1|897019|Al_scaffold_0005_985 265 7e-70
Ahg931042 jgi|Araly1|931042|scaffold_303499.1 239 4e-62
> Ahg897022 jgi|Araly1|897022|Al_scaffold_0005_988
Length=1902
Score = 265 bits (143), Expect = 7e-70
Identities = 275/337 (82%), Gaps = 16/337 (5%)
Strand=Plus/Plus
Query 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508
|||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| ||
Sbjct 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652
Query 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712
Query 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625
|||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | |
Sbjct 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769
Query 626 CCAGACAGTCAACTAGTCCTCCATTTA-AGAAAGTACGCCTAGCACTTAACCACCACACA 684
| ||||||||| || ||||||||| | | ||| ||| |||| ||| |||| | ||
Sbjct 770 CTAGACAGTCATCTTGTCCTCCATCCAGAAAAA-TACATAAAGCAGGTAAACACC-C-CA 826
Query 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741
| | ||||||||||||||| || ||| |||| || ||| ||||||| | ||||||||||
Sbjct 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885
Query 742 TCA-GAACCATTAACTTCATTGCACGAGGGAGACAAT 777
||| | |||||||||||| |||| |||| |||||||
Sbjct 886 TCAAGT-CCATTAACTTCAATGCATGAGGAAGACAAT 921
> Ahg897019 jgi|Araly1|897019|Al_scaffold_0005_985
Length=1902
Score = 265 bits (143), Expect = 7e-70
Identities = 275/337 (82%), Gaps = 16/337 (5%)
Strand=Plus/Plus
Query 449 ATGATGATGAAGCAGAAGATATAAAATTGTGGGTGAATTCGCTGTTGTCTTCTGTAAAAC 508
|||||||||| ||||| ||||||||| ||||||||||||||| |||| | || ||| ||
Sbjct 593 ATGATGATGAGGCAGATGATATAAAACTGTGGGTGAATTCGCAGTTGGATGCTATAAGAC 652
Query 509 ATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTCTGAAAAAGA 568
||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||
Sbjct 653 GTGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTCTGAAAAAGA 712
Query 569 TCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT-CTC-CAGGT 625
|||||||| ||| |||| | || || ||| ||||||| || ||||| || ||| | | |
Sbjct 713 TCAAGGCCCTGACATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATTCTCTC-GCT 769
Query 626 CCAGACAGTCAACTAGTCCTCCATTTA-AGAAAGTACGCCTAGCACTTAACCACCACACA 684
| ||||||||| || ||||||||| | | ||| ||| |||| ||| |||| | ||
Sbjct 770 CTAGACAGTCATCTTGTCCTCCATCCAGAAAAA-TACATAAAGCAGGTAAACACC-C-CA 826
Query 685 T-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC-AACTCCCCCT 741
| | ||||||||||||||| || ||| |||| || ||| ||||||| | ||||||||||
Sbjct 827 TTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATGCTCAAAACATC-CGAACTCCCCCT 885
Query 742 TCA-GAACCATTAACTTCATTGCACGAGGGAGACAAT 777
||| | |||||||||||| |||| |||| |||||||
Sbjct 886 TCAAGT-CCATTAACTTCAATGCATGAGGAAGACAAT 921
> Ahg931042 jgi|Araly1|931042|scaffold_303499.1
Length=1513
Score = 239 bits (129), Expect = 4e-62
Identities = 238/288 (83%), Gaps = 18/288 (6%)
Strand=Plus/Plus
Query 500 CTGTAAAACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGATCTCAGAATCTAAATCTTC 559
|||||| |||||||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 298 CTGTAAGACATGAATTTGCGGAGAGTGTTAAGAAGTTAAGAGCTCAGAATGTGAATCTTC 357
Query 560 TGAAAAAGATCAAGGCCTTGAAATCTGTCAA-ATTGCCCAAATTTCGTTACCACAAGAT- 617
|||||||||| |||||| ||| |||| | || || ||| ||||||| || ||||| ||
Sbjct 358 TGAAAAAGATTAAGGCCCTGAGATCTCTGAAGAT-GCCAAAATTTCAATATCACAA-ATT 415
Query 618 CTC-CAGGTCCAGACAGTCAACTAGTCCTCCATTTAAGAAA-GTACGCCTAGCA-CTTAA 674
||| | | || |||||||||||| ||||||||| |||||| |||| |||| || ||
Sbjct 416 CTCTC-GCTCTAGACAGTCAACTTGTCCTCCATC-AAGAAAAGTACATAAAGCAGCTAAA 473
Query 675 CCACCACACAT-C-GTCTGAATCTCCTGTCAACCCTGTTGTATATTCTCCAAACATCAC- 731
| ||| | ||| | ||||||||||||||| || ||| |||| |||||| ||||||| |
Sbjct 474 C-ACC-C-CATTCTGTCTGAATCTCCTGTGAAGGCTGCTGTAGATTCTCAAAACATC-CG 529
Query 732 AACTCCCCCTTCA-GAACCATTAACTTCATTGCACGAGGGAGACAATG 778
||||||||||||| | |||||||||||| |||| |||| ||||||||
Sbjct 530 AACTCCCCCTTCAAGT-CCATTAACTTCAATGCATGAGGAAGACAATG 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5