BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G36980.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314063 jgi|Araly1|314063|fgenesh1_pm.C_scaffold_1002843           680    0.0  


> Ahg314063 jgi|Araly1|314063|fgenesh1_pm.C_scaffold_1002843
Length=408

 Score =  680 bits (368),  Expect = 0.0
 Identities = 394/407 (97%), Gaps = 0/407 (0%)
 Strand=Plus/Plus

Query  57   ATGGATTTGGCAGAACTGTGGGCGATTTTCGGACCCGGATTCTCCGGCGCCGTTTTCGGA  116
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATTTGGCAGAATTGTGGGCGATTTTCGGACCCGGATTCTCCGGCGCCGTTTTCGGA  60

Query  117  ACCGGGTGGTGGTTTTGGGTCGACGCCGTCGTTTGCAGTTCCATCCAAGTTCCCTTCGTC  176
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  61   ACCGGGTGGTGGTTTTGGGTCGACGCCGTCGTGTGCAGTTCCATCCAAGTTCCTTTCGTC  120

Query  177  CATTACCTTCCCGGCATATTCGCTTCTCTCGGAGCTTTGATGTTCAATTGCGTCAGAAAA  236
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  121  CATTACCTTCCCGGCATATTCGCATCTCTCGGAGCTTTGATGTTCAATTGCGTGAGAAAA  180

Query  237  GAAGACATTGATTACTCTCCTTACGACGAAGGCGAGTGGAGATTGAAGCTGTGGCTTTTC  296
            || || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  181  GAGGATATTGATTACTCTCCTTACGACGAAGGCGAATGGAGATTGAAGCTATGGCTTTTC  240

Query  297  ATAGCGTATGTCGTAGCATTTGTTTCCTTAGCTGCTTCTGTTGGCTTGCTGATTCAAGAT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATAGCGTATGTCGTAGCATTTGTTTCCTTAGCTGCTTCTGTTGGCTTGCTGATTCAAGAT  300

Query  357  TCGGTTGTGAAGACTGGGCCTTCAACTTGGACTGGTGTGGCTGGTGTCTTTCAATGTGTA  416
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || 
Sbjct  301  TCGGTTGTGAAGACTGGGCCTTCGACTTGGACTGGTGTGGCTGGTGTTTTTCAATGCGTG  360

Query  417  TTTGTATTGATAAGTGGGCTAATGTATTGGACATCGCACTCAGAGTA  463
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  TTTGTATTGATAAGTGGGCTAATGTATTGGACATCGCACTCAGAGTA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5