BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G37130.1
Length=3130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922794 jgi|Araly1|922794|scaffold_104075.1 4449 0.0
> Ahg922794 jgi|Araly1|922794|scaffold_104075.1
Length=2782
Score = 4449 bits (2409), Expect = 0.0
Identities = 2660/2782 (96%), Gaps = 14/2782 (1%)
Strand=Plus/Plus
Query 82 CTTTCCAACATGGCGGCCTCTGTAGATAATCGCCAATACGCTCGTCTCGAGCCAGGTTTG 141
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 12 CTTTCCAACATGGCGGCCTCAGTAGATAATCGCCAATACGCTCGGCTCGAGCCAGGTTTG 71
Query 142 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTTCCAGGCCGGTCCGATTCCCCTAAGGCG 201
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 72 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTCCCAGGCCGGTCCGATTCCTCTAA---G 128
Query 202 CACCAGAACCAAACCACCAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 261
| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 -----G---CAAACCA-GAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 179
Query 262 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 239
Query 322 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGGGAC 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 240 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGAGAC 299
Query 382 GAATACACGGCTGATAGCTGGATCGAGCGTAACCCTTCCATGGTACGTCTCACAGGGAAA 441
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 GAATACACGGCTGATAGTTGGATCGAGCGTAACCCTTCCATGGTCCGTCTCACAGGGAAA 359
Query 442 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 419
Query 502 GTCCCGTTGCACTACGTTCGTAACCACGGCCACGTCCCTAAAGCCCAATGGGCCGAATGG 561
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 420 GTCCCGTTGCACTACGTTCGTAACCACGGCCATGTCCCTAAGGCCCAATGGGCTGAATGG 479
Query 562 ACGGTCGAGGTGACCGGATTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 621
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACGGTCGAGGTGACCGGGTTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 539
Query 622 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACGCTAGTCTGCGCGGGGAACCGCCGTAAG 681
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 540 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACACTAGTTTGCGCGGGGAACCGCCGTAAG 599
Query 682 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGATCCGCCGGAGTTTCCACC 741
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 600 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGCTCCGCCGGAGTTTCCACC 659
Query 742 TCCGTGTGGCGTGGTGTCCCTCTCTGCGACGTACTGCGTCGCTGCGGGATCTTTAGCCGA 801
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 660 TCCGTGTGGCGTGGTGTCCCTCTCTGTGACGTTTTGCGTCGCTGCGGGATCTTTAGCCGG 719
Query 802 AAAGGCGGCGCTCTCAACGTCTGCTTCGAAGGGTCGGAGGATCTTCCGGGCGGTGCCGGA 861
|||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 720 AAAGGCGGTGCTCTGAACGTATGCTTCGAAGGGTCGGAGGATCTCCCGGGCGGTGCCGGA 779
Query 862 ACT-GCTGGTTCCAAATACGGAACGAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 920
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 ACTAG-TGGTTCCAAATACGGAACAAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 838
Query 921 AGACATCATTTTGGCTTATATGCAAAACGGAGAGTATCTAACACCAGACCACGGTTTTCC 980
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 839 AGACATCATTTTGGCTTATATGCAAAACGGAGAGCATCTAACACCAGACCACGGGTATCC 898
Query 981 GGTTCGGATCATCATCCCCGGTTTCATTGGTGGCCGGATGGTTAAATGGTTGAAACGAAT 1040
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 899 AGTTCGGATGATCATCCCCGGTTTCATCGGTGGCCGCATGGTTAAATGGTTGAAGCGAAT 958
Query 1041 CATTGTCACAACTAAAGAATCCGACAATTTCTACCATTTCAAGGACAACAGAGTTTTACC 1100
||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 959 CATCGTCACCACGAAAGAATCCGACAATTTCTATCATTTCAAGGATAACAGAGTTTTACC 1018
Query 1101 TTCTTTGGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCAGAGTACAT 1160
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1019 TTCTCTAGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCGGAGTACAT 1078
Query 1161 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCATGTCACGAGGAGATTCTTCC 1220
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1079 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCTTGTCACGAGGAGATTCTTCC 1138
Query 1221 CATCAACGCTTTCACAACCCAAAGACCTTATACTTTAAAGGGTTACGCATATTCCGGAGG 1280
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 CATCAACGCTTTCACAACCCAAAGACCTTACACTTTAAAGGGTTACGCATATTCCGGAGG 1198
Query 1281 TGGaaaaaaaGTGACCCGTGTGGAGGTCACGGTAGATGGTGGAGAGACATGGAACGTATG 1340
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1199 TGGAAAAAAAGTGACCCGTGTGGAGGTCACGGTGGATGGTGGAGAGACATGGAACGTTTG 1258
Query 1341 TGCACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1400
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CGAACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1318
Query 1401 GTCACTTGAGGTTGAGGTTTTGGACTTGCTTAGTGCCAAAGAGATTGCTGTTCGTGCATG 1460
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1319 GTCACTTGAGGTTGAGGTTTTGGACCTGCTTAGTGCCAAGGAGATTGCTGTCCGTGCATG 1378
Query 1461 GGACGAGACTCTCAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1520
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGACGAGACTCTTAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1438
Query 1521 TAACTGCTGGTTTAGAGTGAAGACTAACGTGTGCAAGCCACACAAGGGAGAGATTGGGAT 1580
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1439 TAACTGCTGGTTTAGAGTTAAGACTAACGTGTGCAAGCCACACAAGGGTGAGATTGGGAT 1498
Query 1581 TGTGTTCGAGCATCCAACGCTTCCTGGTAATGAATCTGGTGGATGGATGGCGAAGGAACG 1640
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1499 CGTGTTTGAGCATCCAACGCTTCCGGGTAATGAATCTGGTGGATGGATGGCGAAAGAACG 1558
Query 1641 TCACCTCGAAAAATCGGCTGACGCGCCTCCTAGTCTAAAGAAGTCTGTCTCGACGCCGTT 1700
|||||| |||||||| |||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 1559 TCACCTTGAAAAATCCGCTGACGCGCCTCCTACACTCAAGAAATCTGTCTCGACACCGTT 1618
Query 1701 TATGAACACAACTGCGAAGATGTACTCGATGTCCGAGGTCAAGAAGCATAATTCGGCTGA 1760
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1619 TATGAACACAACTGCGAAGATGTATTCGATGTCCGAGGTCAAGAAGCATAATTCTGCTGA 1678
Query 1761 CTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACACGATTCCTTATGGATCA 1820
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1679 TTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACCCGCTTCCTTATGGACCA 1738
Query 1821 CCCGGGTGGTTCGGATTCAATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1880
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CCCGGGTGGTTCGGATTCGATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1798
Query 1881 AGCCATTCACTCGGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1940
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AGCCATTCACTCTGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1858
Query 1941 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCGGTTCACGGTTCATCCGC 2000
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1859 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCAGTTCACGGTTCATCCGC 1918
Query 2001 CGTGTTCTCGCTGTTGGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 2060
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 CGTGTTCTCGTTGTTAGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 1978
Query 2061 TAATCCCCGGGCTAAAGTCCCGGTTCAACTCGTCGAAAAGACTTCCATTTCTCATGATGT 2120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1979 TAATCCCCGGGCTAAAGTCCCGGTTCAACTTGTCGAAAAGACTTCCATTTCTCATGATGT 2038
Query 2121 TCGTAAATTCCGGTTTGCTTTACCGGTTGAGGATATGGTTCTAGGCTTACCGGTTGGTAA 2180
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 2039 TCGTAAATTCCGGTTTGCTTTACCAGTTGAGGACATGGTCCTAGGCTTACCGGTTGGTAA 2098
Query 2181 GCACATTTTCCTTTGCGCCACCATCAATGACAAGCTCTGCCTCAGAGCTTACACACCAAG 2240
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2099 GCACATTTTCCTCTGCGCCACCATCAATGACAAGCTCTGCCTCAGGGCTTACACACCAAG 2158
Query 2241 CAGCACCGTTGATGTGGTTGGCTACTTCGAGCTCGTGGTCAAGATTTACTTTGGCGGTGT 2300
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2159 CAGCACCGTTGATGTGGTTGGCTACTTCGAACTTGTGGTCAAGATTTACTTTGGTGGTGT 2218
Query 2301 CCACCCAAGATTCCCTAACGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2360
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 CCACCCGAGATTCCCCAATGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2278
Query 2361 GTCAACTTTGGAGATTAAAGGACCATTGGGTCACGTTGAGTATCTCGGCAAGGGTAGTTT 2420
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 2279 GTCAACTTTGGAGATTAAAGGACCGTTGGGTCATGTTGAGTATCTCGGCAAGGGTAATTT 2338
Query 2421 CACGGTTCACGGTAAACCAAAGTTTGCTGATAAATTGGCAATGTTGGCAGGTGGAACCGG 2480
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2339 CACGGTTCACGGTAAACCGAAGTTTGCTGATAAGTTGGCAATGTTGGCAGGTGGAACCGG 2398
Query 2481 AATAACTCCGGTTTACCAAATTATCCAAGCCATTCTCAAGGATCCAGAGGATGAGACTGA 2540
|||||||||||||||||||| || || |||||||| |||||||||||||||||||||||
Sbjct 2399 TATAACTCCGGTTTACCAAATCATTCAGGCCATTCTGAAGGATCCAGAGGATGAGACTGA 2458
Query 2541 AATGTACGTCATTTATGCTAACCGGACCGAGGAAGATATTCTCCTAAGGGAGGAACTGGA 2600
||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 2459 GATGTATGTGATTTATGCTAACCGGACCGAGGAAGATATTCTGCTAAGGGAGGAATTGGA 2518
Query 2601 TGGTTGGGCAGAGCAATACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCAGCTAA 2660
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2519 TGGTTGGGCAGTGCAGTACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCGGCTAA 2578
Query 2661 GGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 AGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2638
Query 2721 TGATGGATTAGATGGCTCAGCCCTTGCCATGGCTTGCGGACCACCACCGATGATTCAGTT 2780
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2639 TGATGGATTAGATGGCTCATCCCTTGCCATGGCTTGTGGACCACCACCGATGATTCAGTT 2698
Query 2781 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2758
Query 2841 CTAGTCTAAAGCCAAGATATTT 2862
||||||||||||||||| ||||
Sbjct 2759 CTAGTCTAAAGCCAAGAGATTT 2780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118232120480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5