BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G37140.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913510 jgi|Araly1|913510|Al_scaffold_0001_3764 749 0.0
> Ahg913510 jgi|Araly1|913510|Al_scaffold_0001_3764
Length=732
Score = 749 bits (405), Expect = 0.0
Identities = 557/628 (89%), Gaps = 20/628 (3%)
Strand=Plus/Plus
Query 69 TCCTCCTTTGTTTAACTTTAACAAGCCATTTCCTTGTTACAACAAGCCTTTTAAAGCTAT 128
|||| || |||| |||||||||||||| |||||||||| || |||||||| ||||||||
Sbjct 102 TCCTTCTGTGTTCAACTTTAACAAGCCCTTTCCTTGTTCCACCAAGCCTTGCAAAGCTAT 161
Query 129 TACCGGCGCTC-ATGTTAAGCCGGaaaaa-aaCCCTTTCGTCCGTTATGGGTTTTGTCAC 186
||||||||| | |||||||||| |||||| || || || ||||||| ||||||||||||
Sbjct 162 TACCGGCGC-CGATGTTAAGCCTGAAAAAGAA-CC-TT--TCCGTTACGGGTTTTGTCAC 216
Query 187 CGGAGATGTCTCCCACCAAGGCTTTTGAAG----AA-----GCCTTTACCGGAAAATAAG 237
| |||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 217 CAGAGATGTCTCCCACCACGGCTTTTGAAGAAACAAGTTGTGCCTTTACCGGAAAATAAG 276
Query 238 CTCGCCGGAAGAACCTCGGTCATGGTTAAGAATATACCTAACTGTCTCGGACGAATGGAT 297
|||||||||| ||| || |||||||||||||||||||||||||||||||| |||| |||
Sbjct 277 CTCGCCGGAAAAACATCCGTCATGGTTAAGAATATACCTAACTGTCTCGGTCGAACCGAT 336
Query 298 CTCTTGAGGATTTTGGACAATCATTGTCGGAAACACAATGA-AAAATCTTCCTACGACTT 356
||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct 337 CTCTTGATGATTTTGGACAATCATTGTCGGAAACACAA-GACAGAATCTTCCTACGACTT 395
Query 357 TCTTTATCTGCCTATGGATTTTGGGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 396 TCTTTATCTGCCTATGGATTTTGTGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 455
Query 417 CACGAGCTCTCTCGCAGCGGAGAGATTCCGGAGAGAATTTGAAAACTTCTCTTGGGACAA 476
||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 456 TACGAGCTCTGTCGCAGCTGAGAGATTCCGGAGAGAATTTGAAAACTTTTCTTGGGGCAA 515
Query 477 TATCGGGTTCAGGAAGAAGATTTGCGAAATTACAGTGGCTAAGTATCAGGGGAAAGAAGA 536
| |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 516 TCTCGGGTACAGGAAGAAGATTTGCGAAATCACTGTGGCTAAGTATCAGGGGAAAGAAGA 575
Query 537 GCTGACTCGACATTTCAGGAACTCAAGGTTTACTTGCCACACCGACGATTATCT-CCCGG 595
||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| ||||
Sbjct 576 GCTGAGTCAACATTTCAAAAACTCGAGGTTCACTTGTCACACCGACGAGTATCTTCCCG- 634
Query 596 TGGTTCTCTCGCCCCCGAGCAACGGCTTCACGGCTTATACTCTCACAAAACTTGGTTACC 655
||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||| |||
Sbjct 635 TGGTTCTCTCGCCACCGAGCAACGGCTTCACGGCTTACACTTTCACAACACTCGGTGACC 694
Query 656 GAGTCGGCGCACTTGGTGGTGGTTCACG 683
||||| || || || ||||||||||
Sbjct 695 GAGTCAGCTTACGAGGCCGTGGTTCACG 722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5