BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G37140.1 Length=702 Score E Sequences producing significant alignments: (Bits) Value Ahg913510 jgi|Araly1|913510|Al_scaffold_0001_3764 749 0.0 > Ahg913510 jgi|Araly1|913510|Al_scaffold_0001_3764 Length=732 Score = 749 bits (405), Expect = 0.0 Identities = 557/628 (89%), Gaps = 20/628 (3%) Strand=Plus/Plus Query 69 TCCTCCTTTGTTTAACTTTAACAAGCCATTTCCTTGTTACAACAAGCCTTTTAAAGCTAT 128 |||| || |||| |||||||||||||| |||||||||| || |||||||| |||||||| Sbjct 102 TCCTTCTGTGTTCAACTTTAACAAGCCCTTTCCTTGTTCCACCAAGCCTTGCAAAGCTAT 161 Query 129 TACCGGCGCTC-ATGTTAAGCCGGaaaaa-aaCCCTTTCGTCCGTTATGGGTTTTGTCAC 186 ||||||||| | |||||||||| |||||| || || || ||||||| |||||||||||| Sbjct 162 TACCGGCGC-CGATGTTAAGCCTGAAAAAGAA-CC-TT--TCCGTTACGGGTTTTGTCAC 216 Query 187 CGGAGATGTCTCCCACCAAGGCTTTTGAAG----AA-----GCCTTTACCGGAAAATAAG 237 | |||||||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct 217 CAGAGATGTCTCCCACCACGGCTTTTGAAGAAACAAGTTGTGCCTTTACCGGAAAATAAG 276 Query 238 CTCGCCGGAAGAACCTCGGTCATGGTTAAGAATATACCTAACTGTCTCGGACGAATGGAT 297 |||||||||| ||| || |||||||||||||||||||||||||||||||| |||| ||| Sbjct 277 CTCGCCGGAAAAACATCCGTCATGGTTAAGAATATACCTAACTGTCTCGGTCGAACCGAT 336 Query 298 CTCTTGAGGATTTTGGACAATCATTGTCGGAAACACAATGA-AAAATCTTCCTACGACTT 356 ||||||| |||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 337 CTCTTGATGATTTTGGACAATCATTGTCGGAAACACAA-GACAGAATCTTCCTACGACTT 395 Query 357 TCTTTATCTGCCTATGGATTTTGGGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 416 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 396 TCTTTATCTGCCTATGGATTTTGTGAAACGAGCCAATTTGGGTTACGCCTTCGTTAACTT 455 Query 417 CACGAGCTCTCTCGCAGCGGAGAGATTCCGGAGAGAATTTGAAAACTTCTCTTGGGACAA 476 ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| ||| Sbjct 456 TACGAGCTCTGTCGCAGCTGAGAGATTCCGGAGAGAATTTGAAAACTTTTCTTGGGGCAA 515 Query 477 TATCGGGTTCAGGAAGAAGATTTGCGAAATTACAGTGGCTAAGTATCAGGGGAAAGAAGA 536 | |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 516 TCTCGGGTACAGGAAGAAGATTTGCGAAATCACTGTGGCTAAGTATCAGGGGAAAGAAGA 575 Query 537 GCTGACTCGACATTTCAGGAACTCAAGGTTTACTTGCCACACCGACGATTATCT-CCCGG 595 ||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||| Sbjct 576 GCTGAGTCAACATTTCAAAAACTCGAGGTTCACTTGTCACACCGACGAGTATCTTCCCG- 634 Query 596 TGGTTCTCTCGCCCCCGAGCAACGGCTTCACGGCTTATACTCTCACAAAACTTGGTTACC 655 ||||||||||||| ||||||||||||||||||||||| ||| |||||| ||| ||| ||| Sbjct 635 TGGTTCTCTCGCCACCGAGCAACGGCTTCACGGCTTACACTTTCACAACACTCGGTGACC 694 Query 656 GAGTCGGCGCACTTGGTGGTGGTTCACG 683 ||||| || || || |||||||||| Sbjct 695 GAGTCAGCTTACGAGGCCGTGGTTCACG 722 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25809214809 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5