BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G37150.2
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473728 jgi|Araly1|473728|fgenesh2_kg.1__3682__AT1G37150.2 1563 0.0
Ahg481423 jgi|Araly1|481423|fgenesh2_kg.4__483__AT2G25710.1 1199 0.0
> Ahg473728 jgi|Araly1|473728|fgenesh2_kg.1__3682__AT1G37150.2
Length=995
Score = 1563 bits (846), Expect = 0.0
Identities = 950/1000 (95%), Gaps = 7/1000 (1%)
Strand=Plus/Plus
Query 92 ATGGATATTGATGCTTCGTGTAGCTTGGTTTTATATGGTAAATCCTCTGTAGAAACTGAT 151
||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 1 ATGGACATTGATGCTTCGTGTAGCTTGGTATTATGTGGTAAATCTTCTGTAGAAACTGAT 60
Query 152 ACAGCAACACGTTTGAAGAACAATAACGTTCTTAAACTCCCAGATAATTCCAAAGTTTCA 211
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACAGCAACACGTATGAAGAACAATAACGTTCTTAAACTCCCAGATAATACCAAAGTTTCA 120
Query 212 ATCTTTTTACAATCTGAGATCAAGAATCTT-GTCAGAGATGATGATTCTTCCTTCAATCT 270
||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 121 ATCTTTTTACAATCTGAGATCAAGAAT-TTGGTCAGAGATGATGA---TTCCTTCAATCT 176
Query 271 TTCGTTGTTCATGAACTCGATTTCGACTCATCGGTTTGGTCGGTTTCTCATTTGGTCTCC 330
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TTCACTATTCATGAACTCGATTTCGACTCATCGGTTTGGTCGGTTTCTCATTTGGTCTCC 236
Query 331 ATACTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGATTCCAGTTGGTTC 390
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 237 ATTCTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGATTCCAGTTGGGTC 296
Query 391 AGTTTGTGTCTCTGATATACAACTTAAAGGTCGAGGCAGAACAAAGAATGTTTGGGAATC 450
||| |||||| | ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 297 AGTGTGTGTCACAGATATTCAGTTTAAAGGTCGAGGCAGAACAAAGAATGTTTGGGAATC 356
Query 451 TCCAAAAGGTTGTCTTATGTATTCGTTTACATTAGAAATGGAAGATGGTCGAGTAGTGCC 510
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 TCCAAAAGGTTGTCTTATGTATTCGTTTACCGTAGAAATGGAAGATGGTCGAGTAGTGCC 416
Query 511 TTTGATACAGTATGTGGTGTCTCTTGCTGTTACTGAGGCAGTGAAAGATGTTTGTGACAA 570
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTTGATACAGTATGTAGTGTCTCTTGCTGTTACTGAGGCAGTGAAAGATGTTTGTGACAA 476
Query 571 GAAGGGTTTGTCGTATAATGATGTTAAAATAAAGTGGCCAAATGATCTATACTTGAATGG 630
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 GAAGGGTTTGTCGTATATTGATGTTAAAATAAAGTGGCCAAATGATCTATATTTGAATGG 536
Query 631 CCTTAAGATTGGAGGCATTTTGTGTACCTCTACATATAGATCAAGGAAGTTCCTTGTCAG 690
||||||| ||||||||||||||||||| || ||||| ||||||||||||||| ||||||
Sbjct 537 CCTTAAGGTTGGAGGCATTTTGTGTACTTCCACATACGGATCAAGGAAGTTCCATGTCAG 596
Query 691 TGTTGGTGTGGGATTGAATGTGGACAACGAGCAACCGACCACGTGCTTAAATGCGGTACT 750
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 597 TGTTGGTGTGGGATTGAATGTGGACAACGAGAAACCGACCACGTGCTTAAATGCAGTACT 656
Query 751 AAAAGACGTTTGCCCTCCATCAAACCTACTTAAAAGAGAAGAAATTCTTGGTGCCTTCTT 810
||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 657 AAAAGACAATTGTCCTGCATCAAATCTACTTAAAAGAGAAGAAATTCTTGGTGCCTTCTT 716
Query 811 TAAGAAGTTTGAAA-ATTTCTTTGATCTATTCATGGAACAAGGTTTTAAATCTCTTGAGG 869
| | || || |||| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TCATAAATTCGAAACA-TTCTTTGATCTATTCATGGAACAAGGTTTTAAATCTCTCGAGG 775
Query 870 AGCTTTACTATAGGACATGGCTTCACAGTGGACAAAGAGTGATTGCTGAAGaaaaaaaCG 929
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 776 AGCTTTACTATAGGACATGGCTTCACAGCGGACAAAGAGTGATTGTTGAAGAAAAAAACG 835
Query 930 AGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTTCGGGATATTTGC 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTTCGGGATATTTGC 895
Query 990 TAGCTATTGGAGATGACAATGTAATGTATGAGCTTCATCCTGATGGCAATAGTTTTGATT 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TAGCTATTGGAGATGACAATGTAATGTATGAGCTTCATCCTGATGGCAATAGTTTTGATT 955
Query 1050 TTTTCAAAGGGCTGGTCCGAAGAAAACTATGAACCAGAGA 1089
|||||||||||||||||||||||||||||||||||| |||
Sbjct 956 TTTTCAAAGGGCTGGTCCGAAGAAAACTATGAACCAAAGA 995
> Ahg481423 jgi|Araly1|481423|fgenesh2_kg.4__483__AT2G25710.1
Length=1299
Score = 1199 bits (649), Expect = 0.0
Identities = 895/1012 (88%), Gaps = 23/1012 (2%)
Strand=Plus/Plus
Query 88 AGCCATGGATATTGATGCTTCGTGTAGCTTGGTTTTATATGGTAAATCCTCTGTAGAAAC 147
||| ||||| | ||||||||| |||| ||||||||| ||||| || |||||||| |||||
Sbjct 148 AGCAATGGAGAGTGATGCTTCTTGTAACTTGGTTTTGTATGGGAAGTCCTCTGTGGAAAC 207
Query 148 TGATACAGCAACA-CGTTTGAAGAACAATAACGT-TCTTAAACTCCCAGATAATTCCAAA 205
||| | ||||| | |||||||||| || ||| | |||| ||||||||||||| |||||
Sbjct 208 TGAGATAGCAA-AGTGTTTGAAGAATAAGAAC-TCACTTACACTCCCAGATAATACCAAA 265
Query 206 GTTTCAATCTTTTTACAATCTGA-GATCAAGAATCTT-GTCAGAGATGATGATTCTTCCT 263
|||||| |||||||| ||||||| | | |||||| || || | |||||||||||| | |
Sbjct 266 GTTTCACTCTTTTTAGAATCTGAGGCT-AAGAAT-TTGGTTAAAGATGATGATTC-T--T 320
Query 264 TCAATCTTTCGTTGTTCATGAACTCGATT-TCGACTCATCGGTTTGGTCGGTTTCTCATT 322
|||||||||| | || |||||||||||| | |||||||||||||| ||||||||||||
Sbjct 321 TCAATCTTTCACTCTTTATGAACTCGATTAT-AACTCATCGGTTTGGGCGGTTTCTCATT 379
Query 323 TGGTCTCCATACTTGTCTTCCACTCACGATGTTGTTTCTCATAACTTCTCTGAGATTCCA 382
|||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||
Sbjct 380 TGGTCTCCGCGCTTGTCTTCCACGCACGATGTTGTTTCTCATAATTTCTCTGAGCTTCCA 439
Query 383 GTTGGTTCAGTTTGTGTCTCTGATATACAACTTAAAGGTCGAGGCAGAACAAAGAATGTT 442
|||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct 440 GTTGGTTCAGTTTGTGTCACAGATATCCAGTTTAAAGGTCGAGGCAGAACAAAGAATGTA 499
Query 443 TGGGAATCTCCAAAAGGTTGTCTTATGTATTCGTTTACAT-TAGAAATGGAAGATGGTCG 501
|||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 500 TGGGAATCTCCAAAGGGTTGTCTTATGTATTCTTTTAC-TCTAGAAATGGAAGATGGTCG 558
Query 502 AGTAGTGCCTTTGATACAGTATGTGGTGTCTCTTGCTGTTACTGAGGCAGTGAAAGATGT 561
| | ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 559 AATCGTGCCGTTGATACAGTATGTGGTATCTCTTGCTGTAACTGAGGCAGTGAAAGATGT 618
Query 562 TTGTGACAAGAAGGGTTTGTCGTATAATGATGTTAAAATAAAGTGGCCAAATGATCTATA 621
||||||||||||||||||| |||| | ||| |||||||| ||||||||||||||||| ||
Sbjct 619 TTGTGACAAGAAGGGTTTGCCGTACATTGACGTTAAAATTAAGTGGCCAAATGATCTCTA 678
Query 622 CTTGAATGGCCTTAAGATTGGAGGCATTTTGTGTACCTCTACATATAGATCAAGGAAGTT 681
||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 679 CTTGAATGGTCTTAAGGTTGGAGGCATTTTGTGTACCTCTACATATAGATCAAAGAAGTT 738
Query 682 CCTTGTCAGTGTTGGTGTGGGATTGAATGTGGACAACGAGCAACCGACCACGTGCTTAAA 741
|| |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 739 CCATGTCAGTGTTGGTGTGGGGTTGAATGTGGACAACGAGCAACCGACGACGTGTTTAAA 798
Query 742 TGCGGTACTAAAAGACGTTTGC-CCTCCATCAAACCTACTTAAAAGAGAAGAAATTCTTG 800
||| |||||||||| | | | | ||| ||||| ||||||||||||||| ||||| ||||
Sbjct 799 TGCAGTACTAAAAGGCATGT-CTCCTGAATCAACCCTACTTAAAAGAGAGGAAATCCTTG 857
Query 801 GTGCCTTCTTTAAGAAGTTTGAAAATTTCTTTGATCTATTCATGGAACAAGGTTTTAAAT 860
||||||||||| | || |||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 858 GTGCCTTCTTTCATAAATTTGAAAAATTCTTTGATCTATTCATGGACCAAGGCTTTAAAT 917
Query 861 CTCTTGAGGAGCTTTACTATAGGACATGGCTT-CACAGTGGA-CAAAGAGTGATTGCTGA 918
|||| |||||||||||||| || |||||| || |||||| || ||||||||||||| |||
Sbjct 918 CTCTGGAGGAGCTTTACTACAGAACATGG-TTACACAGT-GAGCAAAGAGTGATTGTTGA 975
Query 919 AGaaaaa-aaCGAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACTTCTT 977
||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 976 AGAAAAAGGA-GAGGACCAAGTTGTTCAAAATGTTGTGACTATCCAGGGTTTGACATCTT 1034
Query 978 CGGGATATTTGCTAGCTATTGGAGATGACAATGTAATGTATGAGCTTCATCCTGATGGCA 1037
| |||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1035 CAGGATATTTACTGGCTATTGGAGATGACAATCAAATGTATGAGCTTCACCCTGATGGCA 1094
Query 1038 ATAGTTTTGATTTTTTCAAAGGGCTGGTCCGAAGAAAACTATGAACCAGAGA 1089
||||||| || ||||||||||| ||||| ||||||||| ||||| ||| |||
Sbjct 1095 ATAGTTTCGACTTTTTCAAAGGTCTGGTTCGAAGAAAAATATGATCCAAAGA 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5