BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G38131.1
Length=2269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473732 jgi|Araly1|473732|fgenesh2_kg.1__3686__AT1G38131.1 3437 0.0
> Ahg473732 jgi|Araly1|473732|fgenesh2_kg.1__3686__AT1G38131.1
Length=2251
Score = 3437 bits (1861), Expect = 0.0
Identities = 2130/2257 (94%), Gaps = 30/2257 (1%)
Strand=Plus/Plus
Query 1 AGAAAAGAACTTCGTCAATGTTACTGAAAGTTTTCACAGATCCATCGTCTCCATGAGATC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 AGAAAAGAACTTCGTCAATGTTACTGAAAGTTTCCACAGATCCATCGTCTCCATGAGATC 60
Query 61 TCTGTGAATAACATTA--CT-TCTCT-T-TCTCAAACTCAGACTCTCAATAACACAAAAA 115
||||||| |||||||| || ||||| | |||||| |||| | |||||| ||| ||||||
Sbjct 61 TCTGTGATTAACATTACTCTCTCTCTCTCTCTCAAGCTCATAGTCTCAAAAACCCAAAAA 120
Query 116 CCCAGATCTTTCTCTCTCTTCACCACaaaaaaaaaTCGAAAC----TTTAT-TTT-TGCT 169
|||||||||||||||| ||||||| |||||||||||||| ||| | ||| ||||
Sbjct 121 ATCAGATCTTTCTCTCTCCTCACCAC--AAAAAAATCGAAACTTTTTTTTTGTTTGTGCT 178
Query 170 TGATGAAGAGCAAAATCCACCACCAGCCCAATGGTAGCAACAATGGTGTTGTTTCAAGTA 229
||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 179 TGATGAAAAGCAAAATCCACCACCAGCCCAATGGCGGCAACAATGGTGTAGTTTCAAGTA 238
Query 230 ACGATAATGGCTGCCGAAGTGAGTCTCCAAGCCCACCTTTATCTCCAAACCGCCGTGTCC 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACGATAATGGCTGCCGAAGTGAGTCTCCAAGCCCACCTTTATCTCCAAACCGCCGTGTCC 298
Query 290 TCCGTCGTCAACGGCGGCAAACTTTACTCAGAGCTTCTTCTTTCTCTCTCCGGAGAAATC 349
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 TCCGTCGTCAACGGCGGCAAACTTTACTCAGAGCTTCCTCTTTCTCTCTCCGGAGAAATC 358
Query 350 TTCGTTACTTGCTTCTCCTTCCTATGATTTACGCTTCTGGGCTTCTCATGTGTGTTGGTC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TTCGTTACTTGCTTCTCCTTCCTATGATTTACGCTTCTGGGCTTCTCATGTGTGTCGGTC 418
Query 410 CTTTCTCTGGTCTTGTCGGATGGGTTTATGTTCCCGGTTCTGTTTATCGGAGCCCCGAGA 469
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 419 CTTTCTCTGGTCTTGTCGGGTGGGTTTATGTTCCCGGGTCTGTTTATCGGAGCCCCGAGT 478
Query 470 TTTACCGGAAACTTAAAGATGACATTTTCTCCGACAATTCAACCGCCCTTGAGTTGTCTT 529
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 479 TTTACCGGAAACTTAAAGATGACATTCTCTCTGACAATTCAACCGCCCTTGAGTTGTCTT 538
Query 530 CTGTCTGGAAATTCAAAAGAAGACCAAAGATGCCAAAACCTTGTCCTAATTCAACAGTTT 589
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 539 CTGTGTGGAAATTCAAAAGAAGACCAAAAATGCCAAAACCTTGTCCGAATTCAACAGTTT 598
Query 590 CATCACATTTTGGTCTGAACAGAGAATCATCTGCTCTTGCTCCTAGTAGTGGTTACTTAA 649
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 CATCACATTTTGGTCTTAACAGAGAATCATCTGCTCTTGCTCCTAGTAGTGGTTACTTGA 658
Query 650 TCGTGGAAGCAAATGGCGGTCTTAATCAGCAGCGTTCTGCGATTTGCAATGCTGTGGCTG 709
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 TCGTCGAGGCAAATGGCGGTCTTAATCAGCAGCGTTCCGCGATTTGCAATGCTGTGGCTG 718
Query 710 TAGCCGGGCTTCTTAACGCAGTTTTAGTCATACCGCGGTTTGAGTTTCACGCTATTTGGA 769
| ||||| || || |||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 719 TTGCCGGACTCCTAAACGCAGTTTTAGTCATACCGCAGTTTGAATTTCACGCTATTTGGA 778
Query 770 AGGATTCAAGCAACTTTGGTGATATCTATGACGAAGATCACTTCATATCAAGCCTTGAAG 829
|||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 779 AGGATTCAAGCAACTTTGGTGATATCTATGACGAAGATCATTTCATATCGCGCCTCGAAG 838
Query 830 GTTATGTGAAAATAGTGAGAGATGTTCCTGATGAGATAATGACTCGTTTTAGTTACAATG 889
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 839 GTTATGTGAAAATTGTGAGAGATGTTCCTGATGAGATCATGACTCGTTTTAGTTACAATG 898
Query 890 TTTCAAGTATTCCTACTATTCGTGTTCAAGCTTGGGCTACTGTGAACTACTATAACGGGG 949
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 TTTCAAGTATCCCGACTATTCGTGTTCAAGCTTGGGCTACGGTGAACTACTATAACGGGG 958
Query 950 AAGTTTATCCGGTTTTAAAGGAACATGGGGTTATTCGGATAACTCCTTTCGCAAATAGAT 1009
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 959 AAGTCTATCCGGTTTTAAAGGAACATGGGGTTATACGGATTTCTCCTTTCGCAAATAGAT 1018
Query 1010 TGGCGATGAGTGTTCCACCGTATATACAACTTTTGAGGTGCATAGCTAATTACAAAGCAT 1069
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1019 TGGCGATGAGTGTTCCACCGTATATCCAACTTTTGAGGTGCATAGGTAATTACAAAGCAT 1078
Query 1070 TGAAGTTTTCTTCACCTATATCAACACTAGCTGAGAAGTTAGTCGATCGGATGGTTGAGA 1129
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1079 TGAAGTTTTCTTCACCTATATCTACACTAGCTGAAAAGTTAGTCGATCGGATGGTTGAGA 1138
Query 1130 AAAGCTCGGCGACCGGAGGAAAGTATGTCTCGGTCCACCTTCGATTTGAGGAGGACATGG 1189
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAAGCTCAGCGACCGGAGGAAAGTATGTCTCGGTCCACCTTCGATTTGAGGAGGACATGG 1198
Query 1190 TGGCATTCTCATGTTGTCTCTACGAAGGTGGAAGAGCTGAGAAATCTGAAATGGATGTGA 1249
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGCCTTCTCATGTTGTCTCTACGAAGGTGGAAGAGCTGAGAAATCTGAAATGGATGTGA 1258
Query 1250 TTAGACAGAAAAGTTGGAAAGGAAAGTTCAAACGAAGAGATCGTGTCATTAGGCCCGACC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 TTAGACAGAAAAGTTGGAAAGGAAAGTTCAAACGAAGAGATCGTGTCATTAGGCCTGACC 1318
Query 1310 TTAACCGAGTTAACGGAAAATGTCCCCTTACCCCATTAGAGGTCGGTATGATGCTCCGTG 1369
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 TTAACCGAGTTAATGGAAAATGTCCCCTTACCCCGTTAGAGGTCGGTATGATGCTCCGTG 1378
Query 1370 GTATGGGATTTGATAACAACACTTCGATATATTTGGCCTCGGGAAGAATCTACCAACCTG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTATGGGATTTGATAACAACACTTCGATATATTTGGCCTCGGGAAGAATCTACCAACCTG 1438
Query 1430 AGAAACATTTGGCTCCTCTTCAAGAAATGTTTCCTCGTCTCTACACAAAAGAGTCTCTTG 1489
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1439 AGAAACATTTGGCTCCTCTCCAGGAAATGTTTCCCCGTCTCTACACAAAAGAGTCTCTTG 1498
Query 1490 CAACTCCAGAGGAGCTTGCCCCATTTCAGGGATATTCCTCCAGAATGGCTGCTTTGGACT 1549
||| |||||| ||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 1499 CAAGTCCAGAAGAGCTTGCCCCATTTGAGGGACACTCTTCCAGAATGGCTGCTTTGGACT 1558
Query 1550 ACACAGTGAGTTTGCTAAGTGAAGTCTTTGTGACAACTCAAGGTGGAAACTTTCCTCATT 1609
| || ||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 ATACGGTGAGCTTGTTAAGTGAAGTGTTTGTGACAACTCAAGGTGGAAACTTTCCTCATT 1618
Query 1610 TTTTGATGGGCCATCGAAGATTCCTCTTCGGTGGACATGCAAAAACTGTCATACCCGACA 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTTTGATGGGCCATCGAAGATTCCTCTTCGGTGGACATGCAAAAACTGTCATACCCGACA 1678
Query 1670 AACCCAAACTCGTTCTCCTTCTTCAGGACATGGAAATGAGGTGGGAAGTTTTCAAAAAGG 1729
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1679 AACCCAAACTCGTTCTCCTTCTTCAGGACATGGAGATGAGGTGGGAAGTTTTCAAAAAGG 1738
Query 1730 AGATGAAACTGATGCTAGGGGAAAGCGATAGAAAGGGAGTGATGGTACCGAGAGTCAGGA 1789
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1739 AGATGAAACTGATGCTAGGGGAAAGCGATAGAAAGGGAGTGATGGTACCTAGAGTCAGGA 1798
Query 1790 AGATCAACCGGAAAACTTCGATTTACACATACCCGTTACCCGAATGCGAATGCATCTTCC 1849
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1799 AGATAAACCGGAAAACTTCAATTTACACATACCCTTTACCCGAATGCGAATGCATCTTCC 1858
Query 1850 ATTTGTCTTCCAATTTTTCAAACACCGGAAACATTTTGAGCCTTGGAGCTCTTCATCC-A 1908
||||||||||||||||||||| ||||||||||| || |||||||| || ||||| |
Sbjct 1859 ATTTGTCTTCCAATTTTTCAAGTACCGGAAACATACAGAATCTTGGAGCACTACATCCCA 1918
Query 1909 TCTTCCAACCTCAT-AAGTTCTGCAAGACTATAGTCCCTGAGTCATTTTGACCCTTACAC 1967
||||||||||||| || |||||||||||||||||||| |||||| | ||||||||||||
Sbjct 1919 -CTTCCAACCTCATGAA-TTCTGCAAGACTATAGTCCCCGAGTCAATATGACCCTTACAC 1976
Query 1968 TGAAGCTCT-GAGCCAAGTCCTGAATGtttttttGCTCTTGACGGAAGCGAGGAATCAGA 2026
|||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1977 TGAAGC-CTTGAGCCAAGTCCTGAACGTTTTTTTGCTCTTGACAGAAGCGAGGAATCAGA 2035
Query 2027 TAT--------TCTT-ACGAGGAGATTGAGTTCACATAAGTGTAAGAACTCTCTAGGATT 2077
||| |||| || |||| |||||||||||||||||||||||| |||||||||||
Sbjct 2036 TATGGAGGAGATCTTTACAAGGAAATTGAGTTCACATAAGTGTAAGAAATCTCTAGGATT 2095
Query 2078 GAAAGCTGTGTTGCTTGCTACTTCTGGTTAGGAGTTAGGACAGTCACAAAAACAGGGGTG 2137
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2096 GAA-GCTGTGTTGCTTGCTATTTCTGGTTAGGAGTTAGGACAGTCACAAAAACAGGGGTG 2154
Query 2138 TGATTTTCTGTACTTA-TGTTGTTATCTTTTTTGTGCATTACTTACGTTGTCACTCAAAT 2196
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2155 TGATTTTCTGTACTTAGTGTTGTTATCTTTTTTGTGCATTACTTACGTTGTCCCTCAAAT 2214
Query 2197 TGTTCAAGTGTATAGAAATTTTACATCGTTCTGGTGG 2233
|||||||||||||||||||||||||||| ||||||||
Sbjct 2215 TGTTCAAGTGTATAGAAATTTTACATCGCTCTGGTGG 2251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85436419535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5