BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G40083.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg897017 jgi|Araly1|897017|Al_scaffold_0005_983                     191    5e-48


> Ahg897017 jgi|Araly1|897017|Al_scaffold_0005_983
Length=480

 Score =  191 bits (103),  Expect = 5e-48
 Identities = 274/352 (78%), Gaps = 29/352 (8%)
 Strand=Plus/Plus

Query  1    ATGCCTGCATGCATTCTTGCAAAAACT-GTTAGCTATATAGCTGAAG--GTGAGATTGGT  57
            ||||||||| || ||||||| |||| | ||||||||||||| |||||  | || ||||||
Sbjct  151  ATGCCTGCAGGCCTTCTTGCGAAAA-TAGTTAGCTATATAGGTGAAGAAG-GA-ATTGGT  207

Query  58   GAGTTAAAGAATTGGATTTTATCCTGGAGGGAGGGAATGGTAGCAGTATTTTCACCTGAC  117
            |||||||||||||||||| | ||| ||||||| ||||||| ||| ||||| ||||| || 
Sbjct  208  GAGTTAAAGAATTGGATTGTCTCCGGGAGGGAAGGAATGGAAGCTGTATTGTCACCGGAG  267

Query  118  TGTGTGAAATCGGTAAGCCTAGTGTCGGCTTTCCTATTTTTTGACATAGAAGAGGCAATT  177
            ||| |||  || |||||   |             ||  || |||||| ||||| ||||| 
Sbjct  268  TGTCTGACTTCTGTAAG---A-------------TA--TTCTGACATTGAAGATGCAATA  309

Query  178  GAGCTCGCCGC-ATATGCTAAAAA-AGTCTACCCTGTGGCCAAATTATTATACATTATGT  235
             || ||| ||| | | | |||||| ||||||||| |||||| |||| ||||| |||||||
Sbjct  310  AAGGTCGTCGCAACA-G-TAAAAAGAGTCTACCCGGTGGCCGAATTGTTATATATTATGT  367

Query  236  TGAAGAGTTTAGGTGGAAAAGAGGACCACGAAGTTTACTCGAAATTTAAAAAGAGATACA  295
            |||| || |  | |||||| || ||||  | ||| |||||||||||||||||||||||||
Sbjct  368  TGAACAGCTGCGCTGGAAAGGAAGACCGGGTAGTGTACTCGAAATTTAAAAAGAGATACA  427

Query  296  ATTACGAAGAAGCAGAGGGATTTTGTGAAACGTTGAAGTTCCACATAAGAAT  347
            ||||||||||||| |||  ||| ||||  || |||| |||||| |||| |||
Sbjct  428  ATTACGAAGAAGCTGAGCAATTGTGTGGTACATTGAGGTTCCATATAA-AAT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5