BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G40091.1

Length=3456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg319654 jgi|Araly1|319654|fgenesh1_pm.C_scaffold_3002670           357    3e-97


> Ahg319654 jgi|Araly1|319654|fgenesh1_pm.C_scaffold_3002670
Length=249

 Score =  357 bits (193),  Expect = 3e-97
 Identities = 219/232 (94%), Gaps = 0/232 (0%)
 Strand=Plus/Plus

Query  2579  ATGTATCTGAATGATATAGAGACACGATTCACTCGGTATGGCCGCATTGATGATCGACCT  2638
             ||||||||||||||||||||||||||||| | ||| ||||||||| ||||||||||||||
Sbjct  1     ATGTATCTGAATGATATAGAGACACGATTTAATCGTTATGGCCGCGTTGATGATCGACCT  60

Query  2639  CTAGCTCAGACAAGTATAAGACCAAATTCAGAACTTCCATTAATTTTTCTAAACCTTGGA  2698
             ||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct  61    CTAGCTCAGACCAGTATAAGACCAAATTCAGAACTTCCATTTATTTTTCCAAACCTTGGA  120

Query  2699  AGATTTGTTGGAGGGGGTAAGGTTTATACTCTTAATCATGTAGAGAGGCAACAAGCACAT  2758
             ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  121   AGATTTGTTGGAGCGGGTCAGGTTTATACTCTTAATCATGTAGAGAGGCAACAAGCACAT  180

Query  2759  CGGCATATATTGGTCAACTGTCAACTACTTGATCACTTAAGAGAGTACGttt  2810
             || |||||||||||||| |||||||||||||||| |||| ||||||||||||
Sbjct  181   CGACATATATTGGTCAATTGTCAACTACTTGATCCCTTACGAGAGTACGTTT  232



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 130499417817


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5