BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G41880.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg486011 jgi|Araly1|486011|fgenesh2_kg.5__2003__AT3G55750.1 833 0.0
Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1 230 1e-59
Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130 137 9e-32
> Ahg486011 jgi|Araly1|486011|fgenesh2_kg.5__2003__AT3G55750.1
Length=541
Score = 833 bits (451), Expect = 0.0
Identities = 515/545 (94%), Gaps = 8/545 (1%)
Strand=Plus/Plus
Query 43 TTTTTCTCTGTGAATTCGCTCGGCGGCATAAAAGAGAGTAAGAAGAGGAAGACGAGAG-T 101
||||||| |||| ||||||||| ||||||||||||| | ||||||||||| || || |
Sbjct 1 TTTTTCTGTGTGGATTCGCTCGCCGGCATAAAAGAG-G--GGAAGAGGAAGAAGACAGTT 57
Query 102 TACAAGGATTGAAAATGAAGGGACGTCAAGGAGAGAGAGTTAGATTGTATGTTCGTGGAA 161
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 58 TGCAAGGATTGAAAATGAAGGGTCGTCAAGGAGAGAGAGTTAGATTGTATGTTCGAGGAA 117
Query 162 CAGTCCTCGGCTACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCATCCAGA 221
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 118 CAGTCCTCGGTTACAAGAGGTCCAAGTCCAACCAATATCCCAACACTTCTCTCATCCAGA 177
Query 222 TTGAAGGTGTGAACACTCAAGAGGAGGTCAATTGGTACAAGGGTAAGCGTTTGGCTTACA 281
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 178 TTGAAGGTGTGAACACTCAAGAGGAGGTTAACTGGTACAAGGGTAAGCGTTTGGCTTACA 237
Query 282 TCTACAAGGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 341
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTACAAAGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCA 297
Query 342 CTAGGCCTCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCA 401
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 298 CTAGGCCTCATGGTAACAGCGGAGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCTA 357
Query 402 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCTAGCAACATATGAGGAGGA-TAG 460
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct 358 AGTCAATGGGAGCTAGAGTCAGAGTCTTCATGTACCCAAGCAACATATGAG-AGGGCTAG 416
Query 461 ATTTCAAGAAGTATCGGAAGGAATCGCCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 520
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 -TTTCAAGAACTATCGGAAGGAATCACCATTATCATTTCTCAGGAGCTGTAGTTTATCTA 475
Query 521 TTCACTTTTGTTCTAAACTCTCTGTTGGTTTTGATTTTATCTTTAGACGAAGTAAAACA- 579
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TTCACTTTTGTTCTAGACTCTCTGTTGGTTTTGATTTTATCTTTAGACCAAGTAAAACAA 535
Query 580 TTTTT 584
|||||
Sbjct 536 TTTTT 540
> Ahg470729 jgi|Araly1|470729|fgenesh2_kg.1__683__AT1G07070.1
Length=481
Score = 230 bits (124), Expect = 1e-59
Identities = 271/340 (80%), Gaps = 18/340 (5%)
Strand=Plus/Plus
Query 117 TGAAGGGACGTCAAGGAGAGA-GAGTTAGATTGTATGTTC-GTGGAA-CAGTCCTCGGCT 173
|||| ||||| |||||||| | | || ||| | |||| || | |||| || | || ||||
Sbjct 94 TGAAAGGACGCCAAGGAGA-ACGTGTCAGACTCTATG-TCAGGGGAACCA-TACTTGGCT 150
Query 174 ACAAGAGGTCCAAGTCGAACCAATATCCCAACACTTCTCTCA-TCC-AGATTGAAGGTGT 231
|||| ||||| ||||| ||||| ||||| || || || || | ||| || | ||||| ||
Sbjct 151 ACAAAAGGTCGAAGTCAAACCAGTATCCGAATACGTCCCT-AGTCCAAG-TCGAAGGAGT 208
Query 232 GAACACTCA-AGAGG-AG-GTCAATTGGTACAAGGGTAAGCGTTTGGCTTACATCTACAA 288
||||| || |||| || ||| | |||||||| ||||| || ||||||||||||||||
Sbjct 209 TAACAC-CACTGAGGAAGTGTC-A-TGGTACAAAGGTAAACGAATGGCTTACATCTACAA 265
Query 289 GGCAAAGACAAAGAAGAACGGTTCTCACTACCGTTGCATTTGGGGCAAAGTCACTAGGCC 348
|| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 266 AGCCAAGACCAAGAAGAACGGTAGTCACTACCGATGCATTTGGGGCAAAGTCACTAGGCC 325
Query 349 TCATGGTAACAGCGGTGTTGTCCGTTCTAAGTTCACTTCAAACCTACCACCCAAGTCAAT 408
||| |||||||| || ||||| || | || ||||| |||||| | || || || |||||
Sbjct 326 TCACGGTAACAGTGGCGTTGTTCGAGCCAAATTCACATCAAACTTGCCTCCTAAATCAAT 385
Query 409 GGGAGCTAGAGT-CAGAGTCTTCATGTACCCTAGCAACAT 447
|||| || |||| | |||| |||||||| || || |||||
Sbjct 386 GGGATCTCGAGTTC-GAGTGTTCATGTATCCGAGTAACAT 424
> Ahg338031 jgi|Araly1|338031|fgenesh1_pg.C_scaffold_2000130
Length=450
Score = 137 bits (74), Expect = 9e-32
Identities = 80/83 (96%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 647 TTGGGTGGATAGGCATTTGGAGTTGCAAGTAGCTTCTCACTTATTTTTTCCACTTTGATA 706
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 425 TTGGGTGGATATGCATTTGGAGTTGCAATTAGCTTCTCACTTATTTTTTCCACTTTGATA 366
Query 707 GATTCGTGCTCCTTTTGTTTCTC 729
||||| |||||||||||||||||
Sbjct 365 GATTCTTGCTCCTTTTGTTTCTC 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5