BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42430.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473738 jgi|Araly1|473738|fgenesh2_kg.1__3692__AT1G42430.1 2176 0.0
> Ahg473738 jgi|Araly1|473738|fgenesh2_kg.1__3692__AT1G42430.1
Length=1530
Score = 2176 bits (1178), Expect = 0.0
Identities = 1428/1544 (92%), Gaps = 36/1544 (2%)
Strand=Plus/Plus
Query 7 ACTGAAACTGAAACTGAAACTGAAACAC-T-tc--tctctctctctct-T-T---CTCGC 57
||||||||||||||| |||||||||||| | || ||||||||||||| | | |||||
Sbjct 3 ACTGAAACTGAAACTAAAACTGAAACACTTCTCTTTCTCTCTCTCTCTCTCTAAGCTCGC 62
Query 58 TTCCACGAATCGAGAGTTCTACAAATTCGCTTCCTAGGGTTTCTCAATTCTTCTAATTTC 117
|||||||||||||||||| |||||||||||||| |||||||||||| ||| || || |
Sbjct 63 TTCCACGAATCGAGAGTTGTACAAATTCGCTTCTTAGGGTTTCTCATTTC-TCGAA--T- 118
Query 118 TTCATTTCTATGGCGAGTCAATGAGCGAAATGGCGGCTAGCTCCGCAATCTCTCTTCTCG 177
|||| ||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 TTCACTTCCATGGCGAATCTATGAGCGAAATGGCGGCTAGCTCCGCAGTCTCTCTTCTCG 178
Query 178 ATATCAAACTCCGACGATTCGGCGTTGGCGCAAGTAACCATGAATTGCGCCTAACTAAGT 237
||||||| |||||||||||||||||| || | ||||||||||||||||| ||||
Sbjct 179 ATATCAAGCTCCGACGATTCGGCGTT-----AA-T---CATGAATTGCGCCTAACGAAGT 229
Query 238 GGTTCAAAGGTGA-T-C-AAGC--C---GGAGCTCCGACGAGAAGATTCACCTGCTTCGC 289
|| ||||| | | | || | || | || ||||||||||| | ||||| ||
Sbjct 230 GG--AAAAGGAAACTCCTTTGCTTCGATGGTGATCAAACGAGAAGATTTAGGTGCTTTGC 287
Query 290 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCAGAGGAACGGCGTTTTGATCAGAA 349
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 288 AGATATGTTGGCACCGATTCGCCGCTCTGAGAAGTCGGAGGAACGGCGTTTCGATCAGAA 347
Query 350 GATGAGTGCTCACGGTGCCGGAATCAAAACTTCTTCCTCTGCAGTGCCATTTGCTTCTCC 409
|| |||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 348 GACGAGTGCCCACGGTGCCGGAATCAAAACTTCATCTTCTGCAGTGCCATTTGCTTCTCC 407
Query 410 TAAATCTCGATTTTTGTCTAAGCAAGAAAAGTTCTATCCTCGTTGTACTCCAAGGCTTAC 469
|||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 408 AAAATCTCGATTTGTGTCCAAGCAAGAAAAGTTCTACCCTCGTTGTACTCCAAGGCTTAC 467
Query 470 TGGTCCTCAGTCTCGTGATACTCCTCCTAAAAGAGACACTGGGATAGCTAATGAAAAGGA 529
||| |||||||| ||||||||||| |||||| ||||||| ||||| ||||||||||||||
Sbjct 468 TGGCCCTCAGTCCCGTGATACTCCGCCTAAACGAGACACCGGGATTGCTAATGAAAAGGA 527
Query 530 TTGGGGGATTGATTTGTTGAATGAGAATGTGAATGAAG-CTGGCACTAATGAAGATGGTA 588
|||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 528 TTGGGGCATTGATTTGTTGAATGAGAATGTGAATG-AGTCTGGCACTAATGAAGATGGCA 586
Query 589 GTAGTTGGTTTAGAGAAAGTGGACATGATTTGGGAGATAATGGTTACAGATGTAGGTGGT 648
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 587 GTAGTTGGTTTAGAGAGAGTGGACATGATCTGGGAGATAATGGTTACAGATGTAGGTGGA 646
Query 649 CAAGGATGGGTGGTCGATCTCATGATGGTTCTTCTGAATGGACTGAAACGTGGTGGGAGA 708
|||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||||
Sbjct 647 CAAGGATGGGTGGTCGGTCTCACGACGGCTCTTCTGAGTGGACTGAAACGTGGTGGGAGA 706
Query 709 AAAGTGACTGGACTGGATACAAAGAGTTAGGTGTGGAGAAATCTGGTAAAAATTCTGAGG 768
||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||
Sbjct 707 AAAGTGACTGGACTGGATACAAAGAATTAGGTGTGGAGAAATCTGGTAAAAATGCCGAGG 766
Query 769 GTGACTCTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 828
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GTGACACTTGGTGGGAAACTTGGCAAGAAGTCCTTCATCAAGATGAGTGGAGTAATCTAG 826
Query 829 CAAGGATTGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACTGAAAATGCTGGTTGGT 888
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 827 CGAGGATAGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACCGAAAATGCTGGTTGGT 886
Query 889 ACGAGAAATGGTGGGAGAAGTACGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 948
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 887 ACGAGAAATGGTGGGAGAAGTATGATGCTAAAGGGTGGACAGAGAAAGGAGCACATAAGT 946
Query 949 ATGGTAGACTTAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1008
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATGGTAGACTAAATGAGCAGTCATGGTGGGAGAAGTGGGGGGAGCATTATGATGGAAGAG 1006
Query 1009 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GATCTGTTCTCAAATGGACAGACAAGTGGGCTGAGACAGAGTTGGGGACCAAATGGGGAG 1066
Query 1069 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 ACAAGTGGGAAGAGAAATTTTTCAGTGGGATTGGTTCACGTCAGGGGGAGACATGGCATG 1126
Query 1129 TATCACCTAACAGCGACCGTTGGTCAAGAACGTGGGGAGAGGAACACTTTGGAAACGGAA 1188
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1127 TATCACCTAACAGCGACCGTTGGTCAAGAACATGGGGAGAGGAACATTTTGGAAACGGAA 1186
Query 1189 AGGTTCACAAGTACGGAAAGAGTACCACAGGAGAAAGCTGGGACATAGTGGTGGATGAAG 1248
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1187 AGGTTCACAAGTACGGAAAGAGTACGACAGGAGAAAGCTGGGACATAGTCGTGGATGAAG 1246
Query 1249 AAACATACTATGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1308
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 AAACATACTACGAGGCTGAGCCACATTATGGGTGGGCAGATGTGGTAGGTGATTCAACAC 1306
Query 1309 AGTTGCTTTCGATCCAACCACGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1368
||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AGTTGCTCTCAATCCAGCCCCGAGAGAGACCTCCGGGTGTCTACCCAAACCTCGAGTTTG 1366
Query 1369 GGCCATCTCCACCTCCTGAGCCTGACCTACCCCCTGACCAACCACAATGACATCACATCT 1428
| |||||||| |||||||| ||||||| |||||||||| ||||||||||||| |||||||
Sbjct 1367 GACCATCTCCGCCTCCTGAACCTGACCAACCCCCTGACGAACCACAATGACACCACATCT 1426
Query 1429 GTTTGTTTAGCTTATT-AGCGTAATAGCCTTTTTGCTTTATCATTTTTTCGATAAATTTA 1487
|||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||
Sbjct 1427 GTTTGTTTAGCTTATTTAGCATAATAACCTTTTTGCTTTGTCATTTTTTCGATAAATTTA 1486
Query 1488 GAATGTTGTGAATTATGGGTG-AGATGATATAATTCTTGATCCA 1530
|||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1487 GAATGTTGTGAATTATGGGTTTATATGATATAATTCTTGATCCA 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5