BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42480.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473742 jgi|Araly1|473742|fgenesh2_kg.1__3696__AT1G42480.1 918 0.0
> Ahg473742 jgi|Araly1|473742|fgenesh2_kg.1__3696__AT1G42480.1
Length=593
Score = 918 bits (497), Expect = 0.0
Identities = 564/596 (95%), Gaps = 5/596 (1%)
Strand=Plus/Plus
Query 39 agagaCAGATCGGAAGGA-GTTGAGTAAGAATGGCGAAGCTGGTGCTCTTCACCGCCGTA 97
||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AGACACAGATCGGAA-CATTTTGAGTAAGAATGGCGAAGCTGATGCTCTTCACCGCCGTT 59
Query 98 ATTATCGCTATTTTCTCCCATGGATCCTCCGTCGATGACAAATGCGCCGCTTGTAACGCC 157
|||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 60 ATTATCGCGATTATCTCCCACGGAGCCTCCGTCGATGACAAATGCGCCGCTTGTAACGCC 119
Query 158 GTCGCTGAGGAATTAGAGTTACAGCTTTTAAAGGAAAAGCCACGAAACCATCTTGATATG 217
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCGCAGAGGAATTAGAGTTACAGCTTTTAAAGGAAAAGCCACGAAACCATCTTGATATG 179
Query 218 AGAAACCGGCTCAATTCTAAAGGCCAGCGTGAAGGAAAGGTCATTGATTACAGAATAAGC 277
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 AGAAACCGGCTAAATTCTAAAGGCCAGCGTGAAGGAAAGGTTATTGATTACAGAATAAGC 239
Query 278 GACCTGAGGGTGGTTGATTTGTTGGACGGTCTGTGTGATAGAATGCAGGACTATACTCTA 337
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GACCTGAGGGTGGTTGATTTGTTGGACGGGCTGTGTGATAGAATGCAGGACTATACTCTA 299
Query 338 CAAA-AGGTGGAACCTAAGAATAGACAATGGGTGAAAGTAGGAAATTTTGACAATCTAAC 396
|||| || ||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CAAAGAG-TGGAATCTAAGAATAGACAATGGGTGAAAGTGGGAAATTTTGACAATCTAAC 358
Query 397 AAATAAACAGGAAGCGAAAGCGCATGCAAATGACATTTCAACTTATTGTGGAAGATTGCT 456
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAATAAACAGGAAGCTAAAGCGCATGCAAATGACATTTCAACTTATTGTGGAAGATTGCT 418
Query 457 GGAGGAAACTGAAGATGAGCTAGGTGAGGTGATAAAGAATGGCTCCCTAAAAGCAGGAGA 516
|| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 419 TGAAGAAACTGAAGATGAGCTTGGTGAGGTAATAAAGAATGGCTCCCTGAAAGCAGGAGA 478
Query 517 AGTCCGAAAGGTTCTGTGTCAAACTTTGAGTAACCACTGCCGACAATCAAGTGAAACAGA 576
|||||| |||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct 479 AGTCCGCAAGGTTCTGTGTCAAACTTTAAGTAACCACTGCAGCCAATCAAGTGAAACAGA 538
Query 577 CTCAGAGGATGAGGAGGACGACGATGCAGATGAATTATAACTCAATCCAGTGAAAA 632
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 539 CTCAGAAGATGAGGAGGACGACGATGCAGATGAATTATAGCTCAATCCAGT-AAAA 593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5