BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42550.1
Length=2867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922817 jgi|Araly1|922817|scaffold_104098.1 3842 0.0
> Ahg922817 jgi|Araly1|922817|scaffold_104098.1
Length=2572
Score = 3842 bits (2080), Expect = 0.0
Identities = 2414/2577 (94%), Gaps = 16/2577 (1%)
Strand=Plus/Plus
Query 99 cttctt-cttcttcttctACATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACAC 157
|||||| | |||| || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 4 CTTCTTAC-TCTT-TT-TTCATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACGC 60
Query 158 AGCTTCTCGCGGAACTTGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 217
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTTCTCGCGGAACTCGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 120
Query 218 TTGGAAACAGGAGAACAAACTCTCTCGCTCTCCCTCGGAGTTCTGTTCCGTCGCTTGTTA 277
| |||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 121 TCGGAAACCGGAGAACCAACTCTCTCGCTCTCCCGCGCAGTTCTGTTCCATCGCTTGTTA 180
Query 278 CCTCTGCTGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCGCGGG 337
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 181 CCTCTGCCGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCACGGG 240
Query 338 CTCGGCGTTTATCGCTGTCTCCGTGGCGGTCGAGACCGAAACTTGAGGTAGAGGAGGAAG 397
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 241 CTCGGCGTTTGTCGCTGTCTCCGTGGCGGTCGAGACCCAAGCTTGAGGTAGAGGAGGAAG 300
Query 398 AGAATGTTACTCAGAGCAACAGGATTGTCAAGAAACCAGAGGAGTCGTCATCGGGTTCGG 457
| ||||| ||||||| |||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 301 ATAATGTGACTCAGAACAACAGGATTGTCAAGAAACCAGAGGAGTCATCGTCGGGCTCGG 360
Query 458 GTGTGAAGGAAGAGAAGAAAGGGATTTGGAATTGGAAGCCGATTCGAGGGCTGGTTCGGA 517
|| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 361 TTGCCAAGGATGAGAAAAAAGGGATATGGAATTGGAAGCCGATTCGAGGGCTAGTTCGGA 420
Query 518 TTGGTATGCAGAAGCTAAGCTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 577
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGTATGCAGAAGCTAAGTTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 480
Query 578 CAGCGTCGATGAATGGTTTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACTAAAGACG 637
| || || ||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 CGGCCTCAATGAACGGTCTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACAAAAGACG 540
Query 638 GTGCTGTTCAGACGATGCCGTGTAGGGTTTCTCAGGGTTCTGCTGATTTTGAGGAGACCT 697
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 541 GTGCCGTTCAGACGATGCCCTGTAGGGTTTCTCAGGGTTCTGCGGATTTTGAGGAGACAT 600
Query 698 TGTTTATCAAGTGCCATGTGTATTACTCACCGGCGAACGGTAAAGGTAGTCCAGCGAAGT 757
|||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct 601 TGTTCATCAAGTGCCATGTGTACTACACACCGGCGAACGGAAAAGGTAGTCCGGCGAAGT 660
Query 758 TTGAGGCTCGTCCGTTTTTGTTTTATCT-TTTCGCCGTGGATGCCAAGGAACTGGAGTTT 816
|||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||
Sbjct 661 TTGAGGCTCGTCCGTTTTTGTTTTATCTCTTT-GCCGTGGACGCCAAGGAATTGGAGTTT 719
Query 817 GGAAGGCATGTGGTGGATTTGAGTGAGTTGATTCAGGAGTCGGTAGAGAAGATGAATTAC 876
||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||
Sbjct 720 GGAAGGCATGTGGTGGATTTGAGCGAATTGATTCAGGAGTCGGTAGGGAAGATGAGTTAT 779
Query 877 GAAGGAGCTAGGGTTAGGCAATGGGATATGAATTGGGGACTTTCAGGGAAGGCTAAAGGG 936
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 780 GAAGGAGCTAGGGTTAGGCAATGGGATATGAGTTGGGGGCTTTCAGGGAAGGCTAAAGGA 839
Query 937 GGTGAATTGGCTTTGAAATTAGGGTTTCAGATTATGGAGAAAGACGGTGGAGCTGGGATT 996
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 GGTGAATTGGCTCTGAAATTAGGGTTTCAGATCATGGAGAAAGACGGTGGAGCTGGGATT 899
Query 997 TACAGTAAACAAGGCGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTCGCTAAT 1056
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 900 TACAGTAAACAAGGAGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTTGCTAAT 959
Query 1057 TCCTTCGGTCGAAAGCAATCGAAGACGTCGTTTAGTGTTCCGAGCCCTAAA-ATGACGAG 1115
|||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 960 TCCTTCGGGCGAAAGCAATCGAAGACGTCGTTTAGTGTGCCGAGCCC-AAAGATGACGAG 1018
Query 1116 CCGGAGCGAGGCGTGGACGCCAGCGAGTGGTGTGGAGTCAGTTTCGGATTTTCACGGGAT 1175
|||||||||||| ||||||||||||||||| | ||||||||| | ||| |||| |||||
Sbjct 1019 CCGGAGCGAGGCCTGGACGCCAGCGAGTGGCGCGGAGTCAGTAACAGATCTTCAAGGGAT 1078
Query 1176 GGAGCATTTGAATCTGGATGAACCTGAGGAGAAACCCGAGGAGAAACCGGTTCAGAAAAA 1235
||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| ||||
Sbjct 1079 GGAGCATTTGAATCTAGATGAACCCGAGGAGAAACCCGAAGTGAAACCGGTTCAG-AAAA 1137
Query 1236 C-GACAAACCGGAACAGAGAGCTGAAGATGATCAAGAGGAACCAGATTTTGAAGTTGTGG 1294
| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 CAGAGGAACCAGAACAGAGAGCTGAAGATGATCAAGAGGAACCTGATTTTGAAGTTGTGG 1197
Query 1295 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGTG 1354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1198 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGGG 1257
Query 1355 AAAGATCTGTTGAGATGAAGGAACAACATGTTAATGTTGATGATCCACGGCACATAATGA 1414
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1258 AAAGATCCGTTGAGATGAAGGAACAACATGTTAATGTTGATGATGCTCGGCACATAATGA 1317
Query 1415 GACTCACCGAGCTTGATTCAATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1474
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GACTTAGCGAGCTTGATTCGATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1377
Query 1475 ACGAGAGTGATGGAGGTGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1534
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACGAGAATGATGGAGGAGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1437
Query 1535 CTGTGACAAAGGAGTTTCTTCAGTTACTTGAGGATGAAGAAACCGAGAAGCTGAAATTTT 1594
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1438 CGGTGACAAAGGAGTTTCTTCAGTTGCTTGAGGATGAAGAAACCGAGAAGCTCAAATTCT 1497
Query 1595 ATCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCCGTAGACGATGAATCGG 1654
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1498 ACCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCGGTAGATGATGAATCTG 1557
Query 1655 AGAATTACCTCTCGGATCTCGGTAAAGGCATTGGTTGCGTTGTTCAGAC-ACGAGACGGT 1713
||||||||||||| |||||||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 1558 AGAATTACCTCTCAGATCTCGGGAAAGGCATCGGTTGCGTTGTTCAGACGA-GAGACGGT 1616
Query 1714 GGTTACTTAGTCTCTATGAACCCTTTCGACACGGTGGTCATGAGGAAAGACACTCCTAAG 1773
||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1617 GGTTACTTAGTTTCTATGAACCCTTTCGACGCGGTCGTTATGAGGAAAGACACTCCTAAG 1676
Query 1774 CTTGTTATGCAAATCTCCAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1833
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CTTGTTATGCAAATCTCGAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1736
Query 1834 TTCGAGCTATTTCATAGAATGGCGGGTTCGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1893
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1737 TTCGAGCTATTTCATAGAATGGCGGGTTTGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1796
Query 1894 CTTATGGCGATAGATGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTTGAAGGAATA 1953
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1797 CTTATGGCGATAGACGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTCGAAGGAATA 1856
Query 1954 GCGTCAGCGATTATACAAGGGAGGAACAAAGAGAGAGCTAACACGAGCGCAGCGCGAACT 2013
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1857 GCGTCAGCGATTATACAGGGGAGGAACAAAGAGAGAGCGAACACTAGCGCAGCGCGGACT 1916
Query 2014 GTCGCAGCTGTTAAAACAATGGCTAACGCGATGAGCAGCGGAAGAAGGGAGAGAATAATG 2073
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1917 GTTGCAGCTGTTAAAACAATGGCTAACGCAATGAGCAGCGGAAGAAGGGAGAGAATAATG 1976
Query 2074 ACCGGTATATGGAATGTGGAGGAGAATCCATTGACTTCGGCAGAGGAGGTTTTAGCCGTC 2133
||||| || ||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1977 ACCGGAATCTGGAACGTGGAGGAGAATCCACTGACGTCGGCAGAGGAGGTTTTAGCCGTC 2036
Query 2134 TCTTTACAGAAACTAGAGGAAATGGTTGTTGAAGGACTTAAGATTCAAGCTGACATGGTG 2193
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2037 TCTTTACAGAAACTAGAGGAAATGGTGGTTGAAGGACTAAAGATTCAAGCTGACATGGTG 2096
Query 2194 GATGATGAAGCTCCTTTCGAGGTTTCGGCTGCGAAAGGTCAGAAGAATCCACTTGAATCG 2253
|||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2097 GATGATGATGCACCTTTCGAGGTTTCCGCTGCCAAAGGTCAGAAGAATCCACTTGAATCG 2156
Query 2254 ACCATTCCGCTGGAAGAATGGCAAAAGGAGCATCGCACACAGCAAAAGCTAACGGTTTTG 2313
|||||||| || || || |||| ||||||| ||||||||||| |||||||||| |||||
Sbjct 2157 ACCATTCCACTTGACGAGTGGCTAAAGGAGAATCGCACACAGAAAAAGCTAACACTTTTG 2216
Query 2314 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATATGAGGCTGTAGGAGGGACAGTTGTG 2373
||||||||||||||||||||||||||||||||||| || || || ||||||||||| |||
Sbjct 2217 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATACGAAGCGGTGGGAGGGACAGTGGTG 2276
Query 2374 GTAGCAGTACAAGCGGAAGAGGAGGAGGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2433
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2277 GTGGCAGTACAAGCGGAAGAAGAGGAAGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2336
Query 2434 GGGGGAGTGAAGAAAGATGCGGCGGAGAAGCGGAGGCTTACCGCGGCGCAATGGCTTGTG 2493
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2337 GGGGGAGTGAAAAAAGATGCGGCAGAGAAGCGGAGGCTTATGGCGGCGCAATGGCTTGTG 2396
Query 2494 GAACACggaatgggaaagaaagggaagaagaagagtaatataaagaagaaggagaaggaa 2553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 GAACACGGAATGGGAAAGAAAGGGAAGAAGAAGAGTAATATAAAGAAGAAGGAGAAGGAA 2456
Query 2554 gaagaagaagaggagaTGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTT 2613
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GAAGAAGAGGA--A-ATGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTC 2513
Query 2614 AAATCTATAAGGAACCCTGATGTGAAATTGCATTAGTTGATCTTGGAGGTATTCATA 2670
||||||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||
Sbjct 2514 AAATCTATAAGGAACCCTGATGTGAGATTGCAT-AGCTGATCTTTGAGATATTCATA 2569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108214386045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5