BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42560.1
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473744 jgi|Araly1|473744|fgenesh2_kg.1__3698__AT1G42560.1 2385 0.0
> Ahg473744 jgi|Araly1|473744|fgenesh2_kg.1__3698__AT1G42560.1
Length=1462
Score = 2385 bits (1291), Expect = 0.0
Identities = 1409/1465 (96%), Gaps = 11/1465 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGA---GGTGGTGGTGGAGGAGGTGGCGAAGGTCCAAGACAGCTAGACCAGACC 57
||||||||| ||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 1 ATGGCTGGAGGTGGTGGTGGTGGAGGAGGAGGCGAAGGTCCACGACAGCTAGATCAGACC 60
Query 58 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTGATCTCCATTATTTTGGAA 117
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTAATCTCCATTATTTTGGAA 120
Query 118 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 180
Query 178 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACA 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCTCTGCTTCTAACA 240
Query 238 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCT 297
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGTCATGCAATGTCA 300
Query 298 TTTTGTGGTCCATATGATGGACCTAGTGAAG---ATGATCG-TAAAAAGCTCAAGAAAAC 353
||||| ||||| ||||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 301 TTTTGCGGTCCGTATGATGGACCTAGTGAAGATCATGAT-GATAAAAAGCTCAAGAAAAC 359
Query 354 AGACCATGCAATGCGTATTCTCTACTCTGTTCAACGTCGTTCTTTGGCCGACGCTCCTCC 413
|||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||
Sbjct 360 AGACCACGCAATGCGTATTCTCTCCTCCATTCAACGTCGTTCTTTGGCTGACGCTCCTCC 419
Query 414 AGTAAATTGCAAGAAAGATTATGTCGCACTTATATCATTAAACGCATTACATCAAGTGCA 473
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 420 AGTGAATTGCAAGAAAGATTATGTCGCACTTATATCACTAAACGCATTACATCAAATTCA 479
Query 474 TATATTCATATTCTTCTTGGCCGTGTTCCATGTTATATATAGTGCTATAACCATGATGCT 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TATATTCATATTCTTCTTGGCCGTGTTCCATGTGATATATAGTGCTATAACCATGATGCT 539
Query 534 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 599
Query 594 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACA 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGCGAACA 659
Query 654 TGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 713
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TGTCAATTCTTGGGCTAGCAATAAATTTTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 719
Query 714 ACTTAGATCAGTGAGGAAGTCTGATTACTTGACAATGCGACATGGATTCATAAGTGTTCA 773
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 ACTTAGATCAGTGAGGAAGTCTGACTACTTGACAATGCGACATGGATTCATAAGTGTTCA 779
Query 774 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGACGA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGATGA 839
Query 834 CTTCAAGGTGGTTGTAGGAATAAGACCCGAGCTTTGGGCCTTTGTAATGTTGTTTTTACT 893
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 840 CTTCAAGGTGGTTGTGGGAATAAGACCCGAGCTATGGGCCTTTGTAATGTTTTTTTTACT 899
Query 894 CTTCGATGTTCACGGATGGTATGTTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 953
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 CTCCGATGTTCACGGATGGTATATTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 959
Query 954 ACTAGCCATAGGAACAAAGCT-ACAAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1012
||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 960 TCTAGCCATAGGAACAAAACTTA-AAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1018
Query 1013 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1078
Query 1073 TTGAAAAACCCGATCTAGTACTTCATATGATCCACTTCGTTCTGTTTCAGAATGCTTTTG 1132
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 TTGAAAAACCCGCTCTAGTACTTCATATGATCCACTTTGTTCTGTTTCAGAATGCTTTTG 1138
Query 1133 AGATAACTTAttttttttGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1192
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGATTACTTATTTTTTTTGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1198
Query 1193 ATTTTGGCCTTATAATCATTCGTGTCTGCCTAGGGGTGGGAGTACAATTCCTATGCAGTT 1252
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 1199 ATTTTGGCCTTATAATCATTCGTGTCTGTCTAGGGGTAGTCGTACAATTCCTATGCAGTT 1258
Query 1253 ATATCACATTGCCCCTTTACGCTCTCGTCACTCAGATGGGATCCACAATGAAGCGATCAG 1312
|||||||| |||||||||| |||||||| |||||||||||||| || |||||||||||||
Sbjct 1259 ATATCACACTGCCCCTTTATGCTCTCGTAACTCAGATGGGATCGACTATGAAGCGATCAG 1318
Query 1313 TGTTTGATGAGCAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1372
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 TGTTTGATGAACAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1378
Query 1373 ATGAAAAGTGAGAATAATTGGCTTCTCCTTTTAATCTATGGATAGACCAAATTTAACAGT 1432
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1379 ATGAAAAGTGAGAATAATTGGCTTCTCCTTT-AATATATGGATAGACCAAATTTAACAGT 1437
Query 1433 CTAATAGTTTGGTTACTTAATAGTC 1457
||||||||||||||||||| |||||
Sbjct 1438 CTAATAGTTTGGTTACTTAGTAGTC 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5