BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G42560.1 Length=1457 Score E Sequences producing significant alignments: (Bits) Value Ahg473744 jgi|Araly1|473744|fgenesh2_kg.1__3698__AT1G42560.1 2385 0.0 > Ahg473744 jgi|Araly1|473744|fgenesh2_kg.1__3698__AT1G42560.1 Length=1462 Score = 2385 bits (1291), Expect = 0.0 Identities = 1409/1465 (96%), Gaps = 11/1465 (1%) Strand=Plus/Plus Query 1 ATGGCTGGA---GGTGGTGGTGGAGGAGGTGGCGAAGGTCCAAGACAGCTAGACCAGACC 57 ||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||| Sbjct 1 ATGGCTGGAGGTGGTGGTGGTGGAGGAGGAGGCGAAGGTCCACGACAGCTAGATCAGACC 60 Query 58 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTGATCTCCATTATTTTGGAA 117 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CCGACTTGGGCCGTTTCTACAGTTTGTGGTGTTATCATCTTAATCTCCATTATTTTGGAA 120 Query 118 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCATCATTCACAAAGTCGGCGAGGTTTTCGAACGAAAGAAGAAGAAAGCTTTGTTTGAA 180 Query 178 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCCCTGCTTCTAACA 237 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 GCTCTTGAGAAGATTAAAAATGAGCTTATGGTTTTGGGATTTATTTCTCTGCTTCTAACA 240 Query 238 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGCCATGCAATGTCT 297 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 241 TTTGGCCAAAACTACATTGCGAGCATATGTGTTCCATCAAGATACGGTCATGCAATGTCA 300 Query 298 TTTTGTGGTCCATATGATGGACCTAGTGAAG---ATGATCG-TAAAAAGCTCAAGAAAAC 353 ||||| ||||| ||||||||||||||||||| ||||| | |||||||||||||||||| Sbjct 301 TTTTGCGGTCCGTATGATGGACCTAGTGAAGATCATGAT-GATAAAAAGCTCAAGAAAAC 359 Query 354 AGACCATGCAATGCGTATTCTCTACTCTGTTCAACGTCGTTCTTTGGCCGACGCTCCTCC 413 |||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||||||| Sbjct 360 AGACCACGCAATGCGTATTCTCTCCTCCATTCAACGTCGTTCTTTGGCTGACGCTCCTCC 419 Query 414 AGTAAATTGCAAGAAAGATTATGTCGCACTTATATCATTAAACGCATTACATCAAGTGCA 473 ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | || Sbjct 420 AGTGAATTGCAAGAAAGATTATGTCGCACTTATATCACTAAACGCATTACATCAAATTCA 479 Query 474 TATATTCATATTCTTCTTGGCCGTGTTCCATGTTATATATAGTGCTATAACCATGATGCT 533 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 480 TATATTCATATTCTTCTTGGCCGTGTTCCATGTGATATATAGTGCTATAACCATGATGCT 539 Query 534 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TGGAAGAGCCAAGATTCGTGGCTGGAAAGTATGGGAGCAAGAGGTCATCCATGAACAAGA 599 Query 594 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGAGAACA 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 AATGATGAATGATCCATCAAGATTTAGACTCACACATGAGACATCATTTGTCCGCGAACA 659 Query 654 TGTCAATTCTTGGGCTAGCAATAAATTCTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 713 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 660 TGTCAATTCTTGGGCTAGCAATAAATTTTTCTTCTACGTTATGTGCTTCTTCCGTCAAAT 719 Query 714 ACTTAGATCAGTGAGGAAGTCTGATTACTTGACAATGCGACATGGATTCATAAGTGTTCA 773 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 720 ACTTAGATCAGTGAGGAAGTCTGACTACTTGACAATGCGACATGGATTCATAAGTGTTCA 779 Query 774 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGACGA 833 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 780 TTTGGCACCTGGTATGAAGTTTGATTTTCAAAAGTACATCAAAAGATCTTTGGAAGATGA 839 Query 834 CTTCAAGGTGGTTGTAGGAATAAGACCCGAGCTTTGGGCCTTTGTAATGTTGTTTTTACT 893 ||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 840 CTTCAAGGTGGTTGTGGGAATAAGACCCGAGCTATGGGCCTTTGTAATGTTTTTTTTACT 899 Query 894 CTTCGATGTTCACGGATGGTATGTTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 953 || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 900 CTCCGATGTTCACGGATGGTATATTACTGCCGTAATCACCATGATTCCTCCTCTATTAAC 959 Query 954 ACTAGCCATAGGAACAAAGCT-ACAAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1012 ||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 960 TCTAGCCATAGGAACAAAACTTA-AAGCCATTATATCGTACATGGCATTGGAGATTCAAG 1018 Query 1013 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1072 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AGAGACATGCAGTAATTCAAGGGATGCCAGTTGTCAACGTCTCAGACCAACATTTTTGGT 1078 Query 1073 TTGAAAAACCCGATCTAGTACTTCATATGATCCACTTCGTTCTGTTTCAGAATGCTTTTG 1132 |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1079 TTGAAAAACCCGCTCTAGTACTTCATATGATCCACTTTGTTCTGTTTCAGAATGCTTTTG 1138 Query 1133 AGATAACTTAttttttttGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1192 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 AGATTACTTATTTTTTTTGGATATGGTATGAGTTTGGGCTAAGGTCCTGTTTTCATCACC 1198 Query 1193 ATTTTGGCCTTATAATCATTCGTGTCTGCCTAGGGGTGGGAGTACAATTCCTATGCAGTT 1252 |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| Sbjct 1199 ATTTTGGCCTTATAATCATTCGTGTCTGTCTAGGGGTAGTCGTACAATTCCTATGCAGTT 1258 Query 1253 ATATCACATTGCCCCTTTACGCTCTCGTCACTCAGATGGGATCCACAATGAAGCGATCAG 1312 |||||||| |||||||||| |||||||| |||||||||||||| || ||||||||||||| Sbjct 1259 ATATCACACTGCCCCTTTATGCTCTCGTAACTCAGATGGGATCGACTATGAAGCGATCAG 1318 Query 1313 TGTTTGATGAGCAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1372 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 TGTTTGATGAACAAACTTCAAAAGCATTAGAACAATGGCATAAGAAGGCGAGGAAAAAGA 1378 Query 1373 ATGAAAAGTGAGAATAATTGGCTTCTCCTTTTAATCTATGGATAGACCAAATTTAACAGT 1432 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 1379 ATGAAAAGTGAGAATAATTGGCTTCTCCTTT-AATATATGGATAGACCAAATTTAACAGT 1437 Query 1433 CTAATAGTTTGGTTACTTAATAGTC 1457 ||||||||||||||||||| ||||| Sbjct 1438 CTAATAGTTTGGTTACTTAGTAGTC 1462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54507140595 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5