BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G42700.1

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314925 jgi|Araly1|314925|fgenesh1_pm.C_scaffold_1003705           466    6e-131


> Ahg314925 jgi|Araly1|314925|fgenesh1_pm.C_scaffold_1003705
Length=432

 Score =  466 bits (252),  Expect = 6e-131
 Identities = 391/454 (86%), Gaps = 26/454 (6%)
 Strand=Plus/Plus

Query  1    ATGTATACC-TATGACTCTGACAAAACGCAAGATGGAGAGGAGAACTTAAAATGTTCACT  59
            ||||||||| ||  |||| ||| |||| ||| ||||||||||||||   ||| |   | |
Sbjct  1    ATGTATACCTTA-CACTCCGACGAAACACAAAATGGAGAGGAGAAC--CAAACG---AAT  54

Query  60   AGAGAAACTAGCT-AAGAAGATTATTCAAAACGCTGGAGACACTAATGGGAATAATAGTA  118
             |||||||||||| || ||||||| ||||||||||||| |||||  ||||| ||| | ||
Sbjct  55   -GAGAAACTAGCTGAA-AAGATTACTCAAAACGCTGGAAACACTTCTGGGAGTAACAATA  112

Query  119  CCCCAAATTCAAATGATGACTTCGCTCAGGTATTTGGGAGAGAGCGGCCTGGTCGTGTTC  178
            | ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct  113  CGCCAAATTCAAATGATGATTTCGCTCAAGTATTTGGGAGAGAACGGCCTGGTCGTGTTC  172

Query  179  GTTGTGTTGGACTTGGTCCCACTCCTTCGTCATTTATTCAGAATCGCACCACGACAAC-A  237
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct  173  GTTGTGTTGGACTTGGTCCCACTCCTTCGTCATTTTTTCAGAATCGCACCACGAC-ACAA  231

Query  238  TTGAGTAAGGAACAAGAAGTGCTTAGCTTGAATAATCGAGTTCGTGAGTTAGAAGATAAA  297
            |  ||| ||||||| |||||| || ||||||  |||||||||||||||||||||||||||
Sbjct  232  TCCAGTGAGGAACAGGAAGTGATTGGCTTGAGGAATCGAGTTCGTGAGTTAGAAGATAAA  291

Query  298  TTGGTGAAGATGAGTGATTTGGAAGACAAAGTGGATAAGATGAATGAAGTCATATATATA  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| 
Sbjct  292  TTGGTGAAGATGAGTGATTTGGAAGACAAAGTGGATAAGATGAATGAAGT--TATATAT-  348

Query  358  TCAACCTGCCGCCGGCAACAACAATTGCACTACATG-ACTAGTACTATGGATAGAAGGAG  416
             |||| ||||   | |||||||||||||||||| || | ||||  | | || | | || |
Sbjct  349  -CAACTTGCCA--G-CAACAACAATTGCACTACTTGGA-TAGTGGT-TAGA-A-A-GG-G  398

Query  417  ATGGCTTCAAGTAGAAGGCAATGACTTCAAGTAG  450
            ||||||||||||||||||  ||| ||||||||||
Sbjct  399  ATGGCTTCAAGTAGAAGGGGATGGCTTCAAGTAG  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16254280914


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5