BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42960.1
Length=796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473746 jgi|Araly1|473746|fgenesh2_kg.1__3700__AT1G42960.1 1007 0.0
> Ahg473746 jgi|Araly1|473746|fgenesh2_kg.1__3700__AT1G42960.1
Length=731
Score = 1007 bits (545), Expect = 0.0
Identities = 639/683 (94%), Gaps = 12/683 (2%)
Strand=Plus/Plus
Query 9 TTGCTTAGATATCATCGAACTTGCTCCAACTGCTCTATCTCAGGAtctctctcagacaca 68
|||||||||||||||||||||||||||||||||||| ||| |||| ||| ||
Sbjct 1 TTGCTTAGATATCATCGAACTTGCTCCAACTGCTCTCTCTTAGGA----TCT------CA 50
Query 69 gtttcttccatccatggcgtctctttcttctacctctctctctctcCCCAAGAATTCTCA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 51 GTTTCTTCCATCCATGGCGTCTCTTTCTTCTACCTCTCTCTCTCTCCCCAAGAATTCTCA 110
Query 129 CCAACTCCATCCTTCATCTGGTTTTTCTCTGAATCCAAATGCTCGTTGTGTCAGTGTTTC 188
||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||
Sbjct 111 ACAACTCCATCCTTCATCTGGTGTTTCTCTGAAGCCAAATGCTCGTTGTGCCAGTGTTTC 170
Query 189 ATTTGGACTGAATCACTCCAACAAACTTCATATTTCTGCTCCTAGAACCAAAAGGATCCT 248
||||||||||||| || ||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 171 TTTTGGACTGAATCGCTTCAACAAACTGCATATTTCTGCTCCTAGAAACAAAAGGATTCT 230
Query 249 AACCATTCAATCTGCATACAGAGATGATGATGGTTCAGGCAGCACAGGCCTATTCGTCGG 308
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 231 AACCATTCAATCTGCATACAGAGATGATGATGGTTCAGGCAGCACAGGCCTATTTGTTGG 290
Query 309 AGGGTTTATTTTGGGCGGACTTATAGTCGGTGCCCTCGGATGTGTATATGCACCACAGAT 368
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 291 AGGGTTTATTTTGGGTGGACTTATAGTCGGTGCCCTCGGATGTGTATACGCACCACAGAT 350
Query 369 CAGCAAGGCTATAGCTGGAGCAGACCGAAAGGATCTCATGAGGAAGTTGCCTAAATTCAT 428
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 351 CAGCAAGGCTATAGCTGGAGCAGACCGAAAGGATCTCATGAGGAAATTGCCGAAATTCAT 410
Query 429 ATATGACGAGGAAAAAGCTTTGGAGAAAACACGTAAGGTACTAGCTGAGAAAATTGCTCA 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTATGACGAGGAAAAAGCTTTGGAGAAAACACGTAAGGTACTAGCTGAGAAAATTGCTCA 470
Query 489 GCTTAACTCTGCTATCGACGATGTCTCCTCTCAGCTCAAATCAGAAGATACTCCGAATGG 548
||| |||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 471 GCTCAACTCTGCTATCGACGATGTGTCATCTCAGCTAAAATCAGAAGATACTCCAAATGG 530
Query 549 TGCAGCTCTAAGCACCGATGAAATCGAGGCTACAGCCTGAAATCATCTGTTTTTAGGATT 608
|||||||||||||||||||||| |||||||||| |||||| |||||||||||| |||||
Sbjct 531 TGCAGCTCTAAGCACCGATGAAGTCGAGGCTACTGCCTGATATCATCTGTTTT-AGGATC 589
Query 609 TGAAATTGAATCATGGGAGATTACTTACTATGATCCCAATAATTGTTTTCCTTTCTGTGT 668
|||| | |||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 590 TGAA-TCGAATCACGGGAGATTACTTATTATGATCCCAATAATTGTATTCCTTTCTGTGT 648
Query 669 AATGTTGTACAACTTTTCGTCTA 691
|||||||||||||||||||||||
Sbjct 649 AATGTTGTACAACTTTTCGTCTA 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29392769007
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5