BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42980.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913535 jgi|Araly1|913535|Al_scaffold_0001_3789 1055 0.0
> Ahg913535 jgi|Araly1|913535|Al_scaffold_0001_3789
Length=930
Score = 1055 bits (571), Expect = 0.0
Identities = 813/924 (88%), Gaps = 40/924 (4%)
Strand=Plus/Plus
Query 59 ATGGCAAGTAACTGTGAGAAAATGCTTAGCAAAATTAAGATTCCTCTACCAGATATGCTC 118
|||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAAGTAACTGTGCGACAATGCTTAGCAAGATTAAGATTCCTCTACCAGATATGCTC 60
Query 119 AATGCAGTTCTAGATTTGGATTCTTCAGCTGTGATCATTGACCAGATTAAAAATCTAATC 178
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 61 AATGCAGTTCTAGATTTGGATTCTTCAGCTCTGATCATTGAACAGATTAAAAATCTAATC 120
Query 179 AAAATCTGTTGGAGCAAGGAAGAAATGGATCGGTTAAGGAATTCTGCTGGTGGTGACAAG 238
||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 121 AAAATCTGTCGGAGCAAGGAAGAAATGGATCTGTTGAGGAACTCTGCTGGTGGTGACAAG 180
Query 239 GAAGTGCTTGGAAAGTGTGAAGAGATTTTCGGGGAACTAATGATGGTTCCGCGGATAGAA 298
||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GAAATGCTTGGAAAGTTTGAAGAGATTTTCGGGGAACTAATGAAGGTTCCGCGGATAGAA 240
Query 299 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGAGTATCCTTCCAGGGTGAGTGACTTAAAA 358
|||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
Sbjct 241 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGACTATTCTTCCAGGGTGAAAGACTTAAGA 300
Query 359 ATGTGGATGCATACGATAATCGCTGCTACTAAAGAGATAACGGGATCTGTGAAGTTGTTT 418
|| ||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 301 ATCTGGCTGAATACGATAATCGCTGCTACTAAAGAGATAATGGGATCTGTGAAGTTGCTT 360
Query 419 CGGATTATGCAAACAAGTTT-AACAATGCAAGTTCTAAGAGGTTCTAATGTGGAGTGTGG 477
|||||||||||||||| ||| |||| || || ||||| |||||||||||| ||||||||
Sbjct 361 CGGATTATGCAAACAA-TTTCAACACTGGAAATTCTAGGAGGTTCTAATGCGGAGTGTGT 419
Query 478 ACTGGATAGTCTTGTTAAGTTATGTGATAATGTGTATTTGATGCATGACTTTTGCAAGCT 537
||||| ||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 420 ACTGGCTAGTCTTGTTAGGTTATCTGATAATGTGGATTTGATGCATGACTTTTACAAGCT 479
Query 538 -GCTGG--A-----T-------TT--TGG-T------AATGACCTTGTTCACTTAGAAGC 573
| ||| | | || ||| | || ||||||||||||||||||||
Sbjct 480 TGTTGGTGAAAAAATGCCGGAATTGCTGGATTTTGGTAAAGACCTTGTTCACTTAGAAGC 539
Query 574 TGCATCGAGGATTGAATTGGAA-ACCATTACTAATAAGATGCAAGAGTTATTCGACATCG 632
|||||||| |||||||||| || || || || | || |||||| |||||| ||||||||
Sbjct 540 TGCATCGAAGATTGAATTG-AATACGGTTGCTGAGAATATGCAACAGTTATACGACATCG 598
Query 633 AGGAAG-AGGTGAATGATGAGTTCCTAGCTTCAGAAAATGATGGTGCTAATTTTGT-GGG 690
|| | | ||||| |||| |||||| |||||||||||||||||||||| |||||||| |||
Sbjct 599 AG-AGGGAGGTGGATGACGAGTTCATAGCTTCAGAAAATGATGGTGCAAATTTTGTCGGG 657
Query 691 CTACCGAAACGTGGTGCATGATTTTCTTTGTACGA-TTGACGGCGACAAGCAGTTGCTAA 749
| |||||||||| || ||||||||||| ||| || |||| | |||| ||||||||| |
Sbjct 658 TT-CCGAAACGTGCTGTATGATTTTCTTGGTA-GAATTGATGCCGACGCGCAGTTGCTTA 715
Query 750 ATATCTTATACGCAGAAGTGGGA-GGACTTGTAAATTCCTACATA-GCTGAGTATCCAAG 807
||||||||||| |||||| |||| ||| ||||| ||||||||||| | |||||||||||
Sbjct 716 ATATCTTATACTCAGAAGCGGGAAGGA-TTGTAGATTCCTACATAAG-TGAGTATCCAAC 773
Query 808 TGGTGTTCGCTTCAAGGAAGCGACCAACATCCTGACCCGTTTCGTGGAAACGTTCTACAA 867
| | ||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 774 TAGCGTTAGCTTCGAGGAAGTGACCAACATCCTGAACCGTTTCGTGGAAACGTTCTACAA 833
Query 868 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAAGGAGATACTGGAGAAAAGAAA 927
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 834 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAGGGAGATACTGGAGAAA-GAAA 892
Query 928 -AATGAACATCAAACAAAATGGGA 950
|||||||||||| ||||| ||||
Sbjct 893 CAATGAACATCAACCAAAACGGGA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5