BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G42980.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg913535 jgi|Araly1|913535|Al_scaffold_0001_3789 1055 0.0 > Ahg913535 jgi|Araly1|913535|Al_scaffold_0001_3789 Length=930 Score = 1055 bits (571), Expect = 0.0 Identities = 813/924 (88%), Gaps = 40/924 (4%) Strand=Plus/Plus Query 59 ATGGCAAGTAACTGTGAGAAAATGCTTAGCAAAATTAAGATTCCTCTACCAGATATGCTC 118 |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGCAAGTAACTGTGCGACAATGCTTAGCAAGATTAAGATTCCTCTACCAGATATGCTC 60 Query 119 AATGCAGTTCTAGATTTGGATTCTTCAGCTGTGATCATTGACCAGATTAAAAATCTAATC 178 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 61 AATGCAGTTCTAGATTTGGATTCTTCAGCTCTGATCATTGAACAGATTAAAAATCTAATC 120 Query 179 AAAATCTGTTGGAGCAAGGAAGAAATGGATCGGTTAAGGAATTCTGCTGGTGGTGACAAG 238 ||||||||| ||||||||||||||||||||| ||| ||||| |||||||||||||||||| Sbjct 121 AAAATCTGTCGGAGCAAGGAAGAAATGGATCTGTTGAGGAACTCTGCTGGTGGTGACAAG 180 Query 239 GAAGTGCTTGGAAAGTGTGAAGAGATTTTCGGGGAACTAATGATGGTTCCGCGGATAGAA 298 ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 GAAATGCTTGGAAAGTTTGAAGAGATTTTCGGGGAACTAATGAAGGTTCCGCGGATAGAA 240 Query 299 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGAGTATCCTTCCAGGGTGAGTGACTTAAAA 358 |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| | Sbjct 241 CCAAAATTACGAGTGTTTGCTTTTAAGGTTGACTATTCTTCCAGGGTGAAAGACTTAAGA 300 Query 359 ATGTGGATGCATACGATAATCGCTGCTACTAAAGAGATAACGGGATCTGTGAAGTTGTTT 418 || ||| || |||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 301 ATCTGGCTGAATACGATAATCGCTGCTACTAAAGAGATAATGGGATCTGTGAAGTTGCTT 360 Query 419 CGGATTATGCAAACAAGTTT-AACAATGCAAGTTCTAAGAGGTTCTAATGTGGAGTGTGG 477 |||||||||||||||| ||| |||| || || ||||| |||||||||||| |||||||| Sbjct 361 CGGATTATGCAAACAA-TTTCAACACTGGAAATTCTAGGAGGTTCTAATGCGGAGTGTGT 419 Query 478 ACTGGATAGTCTTGTTAAGTTATGTGATAATGTGTATTTGATGCATGACTTTTGCAAGCT 537 ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||| |||||| Sbjct 420 ACTGGCTAGTCTTGTTAGGTTATCTGATAATGTGGATTTGATGCATGACTTTTACAAGCT 479 Query 538 -GCTGG--A-----T-------TT--TGG-T------AATGACCTTGTTCACTTAGAAGC 573 | ||| | | || ||| | || |||||||||||||||||||| Sbjct 480 TGTTGGTGAAAAAATGCCGGAATTGCTGGATTTTGGTAAAGACCTTGTTCACTTAGAAGC 539 Query 574 TGCATCGAGGATTGAATTGGAA-ACCATTACTAATAAGATGCAAGAGTTATTCGACATCG 632 |||||||| |||||||||| || || || || | || |||||| |||||| |||||||| Sbjct 540 TGCATCGAAGATTGAATTG-AATACGGTTGCTGAGAATATGCAACAGTTATACGACATCG 598 Query 633 AGGAAG-AGGTGAATGATGAGTTCCTAGCTTCAGAAAATGATGGTGCTAATTTTGT-GGG 690 || | | ||||| |||| |||||| |||||||||||||||||||||| |||||||| ||| Sbjct 599 AG-AGGGAGGTGGATGACGAGTTCATAGCTTCAGAAAATGATGGTGCAAATTTTGTCGGG 657 Query 691 CTACCGAAACGTGGTGCATGATTTTCTTTGTACGA-TTGACGGCGACAAGCAGTTGCTAA 749 | |||||||||| || ||||||||||| ||| || |||| | |||| ||||||||| | Sbjct 658 TT-CCGAAACGTGCTGTATGATTTTCTTGGTA-GAATTGATGCCGACGCGCAGTTGCTTA 715 Query 750 ATATCTTATACGCAGAAGTGGGA-GGACTTGTAAATTCCTACATA-GCTGAGTATCCAAG 807 ||||||||||| |||||| |||| ||| ||||| ||||||||||| | ||||||||||| Sbjct 716 ATATCTTATACTCAGAAGCGGGAAGGA-TTGTAGATTCCTACATAAG-TGAGTATCCAAC 773 Query 808 TGGTGTTCGCTTCAAGGAAGCGACCAACATCCTGACCCGTTTCGTGGAAACGTTCTACAA 867 | | ||| ||||| |||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 774 TAGCGTTAGCTTCGAGGAAGTGACCAACATCCTGAACCGTTTCGTGGAAACGTTCTACAA 833 Query 868 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAAGGAGATACTGGAGAAAAGAAA 927 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 834 GTCTCGCGAGGAGATTGAAAGACAAGCCGAGGCTGAGAGGGAGATACTGGAGAAA-GAAA 892 Query 928 -AATGAACATCAAACAAAATGGGA 950 |||||||||||| ||||| |||| Sbjct 893 CAATGAACATCAACCAAAACGGGA 916 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5