BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G42990.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473749 jgi|Araly1|473749|fgenesh2_kg.1__3703__AT1G42990.1 1544 0.0
> Ahg473749 jgi|Araly1|473749|fgenesh2_kg.1__3703__AT1G42990.1
Length=1116
Score = 1544 bits (836), Expect = 0.0
Identities = 1034/1125 (92%), Gaps = 32/1125 (3%)
Strand=Plus/Plus
Query 1 GACCATGGCGGAGGAATTTGGAAGCATAGATTTACTC---GGAGATGAAGATTTCTTCTT 57
||||||||||||||||||||||||| | ||||||||| || ||||| ||||| |||||
Sbjct 1 GACCATGGCGGAGGAATTTGGAAGCTTTGATTTACTCGTAGGTGATGATGATTTGTTCTT 60
Query 58 CGATTTCGATCCTTCAATCGTAATTGATTCTCTTCCGGCGGAGGATTTTCTTCAG---TC 114
|||||||||||||||||| || |||||||||| |||||||||||||||||| ||| ||
Sbjct 61 CGATTTCGATCCTTCAATAGTCATTGATTCTCCTCCGGCGGAGGATTTTCTCCAGTCTTC 120
Query 115 TTCACCGGATTCATGGATCGGAGAAATCGAGAATCAATTGATGAACGATGAGAATCATCA 174
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TTCACCGGATTCATGGATCGGAGAAATCGAGAATCAATTGATGAACGATGAGAATC-TTG 179
Query 175 AG-AGGAGAGTTTTGTGGAATTGGATCAGCAATCGGTTTCAGATTTCATAGCGGATCTAC 233
|| ||||||||||| |||| |||||||| |||||||||||||||||||| || ||| |||
Sbjct 180 AGAAGGAGAGTTTTCTGGAGTTGGATCAACAATCGGTTTCAGATTTCATTGCCGATTTAC 239
Query 234 TCGTTGATTATCCAACTAGCGATTCTGGCTCCGTTGATTTGGCGGCTGATAAAG-TT-C- 290
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct 240 TCGTTGATTATCCAACAAGCGATTCTGGCTCCGTTGATTTGGCGGCTGATAAAGTTTCCG 299
Query 291 ----TA--ACCGTCGATTCTCCCGCCGCCGCTGATGATTCCGGGAAGGAGAATTCGGATT 344
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 ATGTTATCACCGTCGATTCTCCCGTCGCCGCTGATGATTCCGGGAAGGAGAATTCGGATT 359
Query 345 TGGTTGTTGAGAAGAAGTCTAATGATTCTGGTAGCGAGATTCATGATGATGATGACGAAG 404
||||||||||||||||||||||||||||||| || |||||||| | |||||||| || |
Sbjct 360 TGGTTGTTGAGAAGAAGTCTAATGATTCTGGGAGTGAGATTCA-G--GATGATGATGATG 416
Query 405 AAGGAGACGATGATGCTGTGGCTAAAAAACGAAGAAGGAGAGTAAGAAATAGAGATGCGG 464
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 AAGGAGACGATGATGCTGTGGCTAAGAAACGAAGAAGGAGAGTAAGAAATAGAGATGCGG 476
Query 465 CGGTTAGATCgagagagaggaagaaggaatatgtacaagatttagagaagaagagtaagt 524
||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 477 CGGTTCGATCCAGAGAGAGGAAGAAGGAATATGTGCAAGATTTAGAGAAGAAGAGTAAGT 536
Query 525 atctcgaaagagaaTGCTTGAGACTAGGACGTATGCTTGAGTGCTTCGTTGCTGAAAACC 584
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 ATCTCGAAAGAGAATGCTTGAGACTAGGACGTATGCTTGAGTGCTTCGTTGCCGAAAACC 596
Query 585 AGTCTCTACGTTACTGTTTGCAAAAGGGTAATGGCAATAATACTACCATGATGTCGAAGC 644
|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 597 AGTCTCTACGTTACTGTTTGCAAAAGGGTAGTGGTAATAATACTTCCATGATGTCGAAGC 656
Query 645 AGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTTCTGG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 AGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGTTGGGTTCCCTGCTTTGGCTTCTGG 716
Query 705 GAGTAAACTTCATTTGCCTATTCCCTTATATGTCCCACACAAAGTGTTGCCTCCTAC-GT 763
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | ||
Sbjct 717 GAGTAAACTTCATTTGCCTATTCCCTTATCTGTCCCACACAAAGTGTTACCTCCTCCTGT 776
Query 764 CCAGAACCAGAAAAGCTGGTTCTAAACGGGCTCGGGAGTAGTAGCAAACCGTCTTATACC 823
| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 777 C-AGAACCAGAAAAGCTGGTTCTAAACGGGCTCGGGAGTAGTAGCAAACCATCTAATACC 835
Query 824 GGCGTTAGTCGGAGATGTAAGGGTTCGAGGCCTAGGATGAAATACCAAATCTTAACCCTT 883
| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 836 GACGTGAGTCGGAGATGTAAGGGTTCAAGGCCTAGGATGAAACACCAAATCTTAACCCTT 895
Query 884 GCGGCGTGACAACGCCTTTTTTAACTGCTTCTTTTGCGCATTTTGAGTTGTAGATGAGTG 943
| || |||||||||||||||| ||||||||| |||||||||| |||| |||||||||||
Sbjct 896 GTGGTGTGACAACGCCTTTTT-AACTGCTTCCTTTGCGCATTC-GAGTCGTAGATGAGTG 953
Query 944 TCTT--TTAGTTTTCTCTCTCTTGTTTT-GTATTT-CGCTGTTGAAAGTTTTCTGTCTAA 999
|| | ||||| ||||||| | ||||| |||||| ||||||||||| ||||||||||||
Sbjct 954 TCGTCCTTAGTAGTCTCTCT-T-GTTTTTGTATTTTCGCTGTTGAAAATTTTCTGTCTAA 1011
Query 1000 TATCGATAAGTTAACAGTGAATGTGGGTCTTATGGTTATGGATGATATCTATCTAATAAT 1059
||| ||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1012 TATGGATAAGTAAACGGTGAATGTGAGTCTTATGGTCCTGGATGATATCTATCTAATAAT 1071
Query 1060 GCTTCTG--CCTTTAAAATGTTGATTTTGAGGCATAACTTCAGGT 1102
| |||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1072 GTTTCTCTACCTTTAAAATTTTGATTTTGAGGCATAACGTCAGGT 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5