BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43000.1
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913538 jgi|Araly1|913538|Al_scaffold_0001_3792 782 0.0
> Ahg913538 jgi|Araly1|913538|Al_scaffold_0001_3792
Length=639
Score = 782 bits (423), Expect = 0.0
Identities = 579/653 (89%), Gaps = 16/653 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAACGACGACGTAATGACTCCGCCATGGCTAACACCAATGCTTCGAGCTGATTAC 60
||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||| |||
Sbjct 1 ATGGAGAACGATGACGTAATGATTCCGCCATGGCTAAAACCAATGCTCCGAGCTGACTAC 60
Query 61 TTCGTGACTTGTTCGATTCATTCACA-ATCGAGTAAAAGTGAATGTAATCTGTTTTGTTT 119
|| ||||||||||||||||| || | ||||||||| |||||||||||||||||||| ||
Sbjct 61 TTTGTGACTTGTTCGATTCACGCA-AGATCGAGTAAGAGTGAATGTAATCTGTTTTGCTT 119
Query 120 GGATTGTTCAGGCAATGCCTTTTGTTCTTCTTGTCTCGCTCATCACAGA-ACCCATCGTG 178
|||||||| |||||||||||||||||||| |||| | | | |||||||| | ||||||||
Sbjct 120 GGATTGTTTAGGCAATGCCTTTTGTTCTTATTGTTTTGATGATCACAGAGA-CCATCGTG 178
Query 179 TTATCCAGATTCGACGATCGTCGTATCATAATGTGGTGAGAGTGAGTGAGATTCAAAAAC 238
|| | |||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||
Sbjct 179 TTGTTCAGATTCGACGATCTTCGTATCATAATGTTGTGAGAATGAGTGAGATTCAGAAAC 238
Query 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCTTAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCCTAA 298
Query 299 ACGCGAGACCTCAATGTCGAACTGGTAAAAGCTTAAACAAAACATGTCAGATCTGTTCTC 358
||| ||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 299 ACGAGAGACCTCAGTGTAAAACGGGTAAAAGCGTAAACAAAACATGTCAGATCTGTTCTC 358
Query 359 GTAACCTTCTCGATTCGTTCCTGTTCTGTTCTCTTGCTTGTAAGCTTGAAGGTGTGAAGA 418
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 359 GTAACCTTCTCGATTCGTTCCGGTTCTGTTCTCTTGCTTGTAAGCTTGAATGTGTCAAGA 418
Query 419 ATGGAGAGGATCCAAACCTGACTTTATTTCATAGTGGAAAGAGTGATGACTCGTCGAAGA 478
||| ||||||||||| |||| || | || | | | ||| ||| |||||||
Sbjct 419 GTGGGGAGGATCCAAATTTGACCTTCTGTC-TCG-G-------TGA---CTCCTCGAAGA 466
Query 479 TCATCAATACCGGGATTTGTAGCCGTTTGATCGACGGGATCTCGATTGCGGTTGACGACC 538
|| ||||| ||| ||||||||||| |||||| |||| |||||||| || ||||| || |
Sbjct 467 TCCGCAATAGCGGAATTTGTAGCCGGTTGATCAACGGAATCTCGATCGCAGTTGATGATC 526
Query 539 AACGCAGCGAAACCGCGGGTGTGTTATCTCCAGAGACACCTTCAATAGAAAGCCACCGGA 598
||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 527 AACGCAGTGAAACCGCTGCTGTGTTATCTCCAAAGACACCTTCAATAGAAAGCCACCGGA 586
Query 599 ATTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCAACGAGCACCTTTCTAA 651
|||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 587 GTTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCACCGAGCACCTTTCTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23864946042
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5