BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G43000.1 Length=651 Score E Sequences producing significant alignments: (Bits) Value Ahg913538 jgi|Araly1|913538|Al_scaffold_0001_3792 782 0.0 > Ahg913538 jgi|Araly1|913538|Al_scaffold_0001_3792 Length=639 Score = 782 bits (423), Expect = 0.0 Identities = 579/653 (89%), Gaps = 16/653 (2%) Strand=Plus/Plus Query 1 ATGGAGAACGACGACGTAATGACTCCGCCATGGCTAACACCAATGCTTCGAGCTGATTAC 60 ||||||||||| |||||||||| |||||||||||||| ||||||||| |||||||| ||| Sbjct 1 ATGGAGAACGATGACGTAATGATTCCGCCATGGCTAAAACCAATGCTCCGAGCTGACTAC 60 Query 61 TTCGTGACTTGTTCGATTCATTCACA-ATCGAGTAAAAGTGAATGTAATCTGTTTTGTTT 119 || ||||||||||||||||| || | ||||||||| |||||||||||||||||||| || Sbjct 61 TTTGTGACTTGTTCGATTCACGCA-AGATCGAGTAAGAGTGAATGTAATCTGTTTTGCTT 119 Query 120 GGATTGTTCAGGCAATGCCTTTTGTTCTTCTTGTCTCGCTCATCACAGA-ACCCATCGTG 178 |||||||| |||||||||||||||||||| |||| | | | |||||||| | |||||||| Sbjct 120 GGATTGTTTAGGCAATGCCTTTTGTTCTTATTGTTTTGATGATCACAGAGA-CCATCGTG 178 Query 179 TTATCCAGATTCGACGATCGTCGTATCATAATGTGGTGAGAGTGAGTGAGATTCAAAAAC 238 || | |||||||||||||| |||||||||||||| |||||| ||||||||||||| |||| Sbjct 179 TTGTTCAGATTCGACGATCTTCGTATCATAATGTTGTGAGAATGAGTGAGATTCAGAAAC 238 Query 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCTTAA 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 239 ATATTGATATCTCTTGTATTCAGACTTATGTTATCAATAGTGCTAAGATCTTCTTCCTAA 298 Query 299 ACGCGAGACCTCAATGTCGAACTGGTAAAAGCTTAAACAAAACATGTCAGATCTGTTCTC 358 ||| ||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||| Sbjct 299 ACGAGAGACCTCAGTGTAAAACGGGTAAAAGCGTAAACAAAACATGTCAGATCTGTTCTC 358 Query 359 GTAACCTTCTCGATTCGTTCCTGTTCTGTTCTCTTGCTTGTAAGCTTGAAGGTGTGAAGA 418 ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| Sbjct 359 GTAACCTTCTCGATTCGTTCCGGTTCTGTTCTCTTGCTTGTAAGCTTGAATGTGTCAAGA 418 Query 419 ATGGAGAGGATCCAAACCTGACTTTATTTCATAGTGGAAAGAGTGATGACTCGTCGAAGA 478 ||| ||||||||||| |||| || | || | | | ||| ||| ||||||| Sbjct 419 GTGGGGAGGATCCAAATTTGACCTTCTGTC-TCG-G-------TGA---CTCCTCGAAGA 466 Query 479 TCATCAATACCGGGATTTGTAGCCGTTTGATCGACGGGATCTCGATTGCGGTTGACGACC 538 || ||||| ||| ||||||||||| |||||| |||| |||||||| || ||||| || | Sbjct 467 TCCGCAATAGCGGAATTTGTAGCCGGTTGATCAACGGAATCTCGATCGCAGTTGATGATC 526 Query 539 AACGCAGCGAAACCGCGGGTGTGTTATCTCCAGAGACACCTTCAATAGAAAGCCACCGGA 598 ||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||| Sbjct 527 AACGCAGTGAAACCGCTGCTGTGTTATCTCCAAAGACACCTTCAATAGAAAGCCACCGGA 586 Query 599 ATTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCAACGAGCACCTTTCTAA 651 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 587 GTTACCCAATGAAGAGTAGAAGAAAGGGTATACCTCACCGAGCACCTTTCTAA 639 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23864946042 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5