BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43020.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314088 jgi|Araly1|314088|fgenesh1_pm.C_scaffold_1002868 1520 0.0
> Ahg314088 jgi|Araly1|314088|fgenesh1_pm.C_scaffold_1002868
Length=1350
Score = 1520 bits (823), Expect = 0.0
Identities = 1179/1346 (88%), Gaps = 44/1346 (3%)
Strand=Plus/Plus
Query 21 TCGAAGAAATATCGATAttcttcatcttcttcttt-ttcttcttcatcttcttctCAGCT 79
|||||||| ||||||||||| || ||||||| ||| ||||||||||||||||||||||||
Sbjct 7 TCGAAGAATTATCGATATTCATCTTCTTCTT-TTTCTTCTTCTTCATCTTCTTCTCAGCT 65
Query 80 AAGTACTCCAAGAGCATTGCAAAATGGG-TATTCTCAAGCCATTGCTAAATCTCCTCTTT 138
|||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct 66 AAGTACTCCAAGAGCATTTCAAAATGGGCCA-TCTCAAGCCATTGATAAATCTCCTCTCT 124
Query 139 GGGATGTTGAAG-AGGTGAAATGCAGCTTTAGTTCCTCAGTGTCTAAGTGGAACGAAGAA 197
||||||||| || ||||||| |||||||||||||||||||||| ||||| ||||||||||
Sbjct 125 GGGATGTTG-AGAAGGTGAAGTGCAGCTTTAGTTCCTCAGTGTATAAGTCGAACGAAGAA 183
Query 198 CTTATTGGAGAGATCGCGGAACTTGACACCGAGATCTTACAGTTAGAGCGGTATCTTCTC 257
|||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 184 CTTATTGGAGAGATCGCGGAGCTTGACACAGAGATCTTACTTTTAGAGCGGTATCTTCTC 243
Query 258 TCGCTATACAGATCATCTTTTGGAG---A------T-CAT--TTG-C-CT-GATAATTCT 302
|||||||||||||||||||| |||| | | ||| ||| | || |||||||||
Sbjct 244 TCGCTATACAGATCATCTTTCGGAGATCATTTGCCTGCATCATTGTCACTAGATAATTCT 303
Query 303 TCACTCCCTCCATGCACGACCAAATTTCACAATGACCAGGCCTCTTCTGTTTCTGATAAG 362
|||||||||||| || |||||||||| ||||||||| ||| ||||||| |||||||||
Sbjct 304 CCACTCCCTCCATACAAGACCAAATTTTACAATGACCGGGCGTCTTCTGAGTCTGATAAG 363
Query 363 TCTGTCTTGTCCAGGC-TCAA-ACAGTTCTCTAAAACGGACAAGATAAAAGGATCTGACT 420
||||||||||| | || |||| || || ||| | | ||||||||||||| |||| ||||
Sbjct 364 TCTGTCTTGTCTA-GCTTCAAGTCA-TTGTCTGAGATGGACAAGATAAAAAGATCCGACT 421
Query 421 CTGGTCACCCGAGTTTGGCTGATCTTCTTGGTCTTAACACTCTCAG-CCCTAATAAACTC 479
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 422 CTGGTCACCCGAGTTTGGCTGATCTTCTTGGTCTTAACACTCTCAGTCCC-AATAAACTC 480
Query 480 TCTGAAGAGATTCTGAGAAGTATTTGTGTGATACACTACAAACTCTCAGACAAT--GG-A 536
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct 481 TCGGAAGAGATTCTGAGAAGTATTTGTGTGGTACACTACAAACTCTCAGACAAGCAGGGA 540
Query 537 CATAACAGATTGGTCAAGAA---CTCAAAGAATGAAGAGTATGG--GCAGGAACTTGGAG 591
|||| |||| | |||||||| ||||||||||||| | ||| | ||||||||||||
Sbjct 541 CATAGCAGAATAGTCAAGAAGAACTCAAAGAATGAAAA-TATTAATG-AGGAACTTGGAG 598
Query 592 TTGGTATCCATAAGCTATACCTAGACGATTACAATTTAAAGTCCGTAGAGAGCATGCTTC 651
||| |||| ||| || | |||||| ||| ||||||| ||||| ||||||||| ||||||
Sbjct 599 TTGTTATCGGTAAACTTTGCCTAGAAGATGACAATTTGAAGTCGGTAGAGAGCTTGCTTC 658
Query 652 AGAATTTTAGATCATTAGTTCAAAAGCTCGAGAAAGTTGATCCGGCAAGGCTCGG-TCGG 710
||||||||||||| || |||||||||||||||||||||||||| | |||| | || | ||
Sbjct 659 AGAATTTTAGATCGTTGGTTCAAAAGCTCGAGAAAGTTGATCCCGAAAGGAT-GGCTAGG 717
Query 711 GAAGAGAAGCTTGCGTTCTGGATCAACATACATAATGCTTTGGTGATGCACGAATATATA 770
|||||||| |||||||||||||| ||||| ||||||||||| |||||||||| ||||||
Sbjct 718 GAAGAGAAACTTGCGTTCTGGATAAACATTCATAATGCTTTAGTGATGCACGCGTATATA 777
Query 771 GTATATGGAATTGGTGAAGATACAACAAGCACATTAATGAAT-TTGAAGGCAGCATTTAA 829
||||||||| || |||||||||||||||||||| | || | |||||||||||||||||
Sbjct 778 GTATATGGATTTAGTGAAGATACAACAAGCACA--AC-GA-TCTTGAAGGCAGCATTTAA 833
Query 830 CATAGGTGGGGAGTGGGTAAATGCATACGATATCCAGAGTTCGATATTGGGCATTCGTCC 889
||| ||||||||| || |||| ||||||||| |||||||||||||||||||||||| | |
Sbjct 834 CATCGGTGGGGAGCGGATAAACGCATACGATGTCCAGAGTTCGATATTGGGCATTCATGC 893
Query 890 ATGCCATTCACCATCACGTTTACGGACGCTGTTTTCACCGGCTAAGAGTTCAAAGACAAG 949
|||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||
Sbjct 894 ATGCCATTCACCATCACGTTTATGGACGTTATTTTCACCGGCTAGGAGTTCAAAGACAAG 953
Query 950 TAGTGGTAGACACACTTACGCGTTGGACTATGCCGAGCCACTTCTTCATTTTGCCCTCTC 1009
||| ||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 954 TAGCGGTCGACACACTTATTCGTTGGATTATGCCGAACCACTTCTTCATTTTGCCCTCTC 1013
Query 1010 GACCGGAGCATCAACCGATCCAATGGTCAGAGTGTATACATCAGAAGGAATCTTTCAAGA 1069
|| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1014 TACAGGAGCATCAACCGATCCAATGGTCCGAGTTTATACAGCAGAAGGAATCTTTCAAGA 1073
Query 1070 ACTTAGGCAAGCAAGAGACAGTTACATCCAAACAAGTGTTGGATTTGAGAAAGAGACAAA 1129
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1074 ACTTAGGCAAGCAAGAGACAGTTTCATCCAAACAAGTGTTCGATTTGAGAAAGAGACAAA 1133
Query 1130 GATTTTATTGCCAAAGATCATTTACAACTATGCGAAGGATACTTCTCTTGACATGGGTGA 1189
|||| ||||||||||||||||||||||||| || |||||||||||||| ||||||| |||
Sbjct 1134 GATTCTATTGCCAAAGATCATTTACAACTACGCAAAGGATACTTCTCTCGACATGGCTGA 1193
Query 1190 ACTCTTTAGTACCGTGTCTGAGTGTTTAATGGAGTCACAAAGAACGGCAATGAGAAGAAT 1249
|||||||| |||| | || ||||| ||| ||| ||||||||||| || ||| | || |
Sbjct 1194 ACTCTTTAATACCATATCAGAGTGCCTAACAGAGACACAAAGAACGACACTGACACGAGT 1253
Query 1250 TGTGAACAAAAAGCAAGAGAGATGCATTCGTTGGGTTCACGATGAATCCAAGTTCCGTTA 1309
||| || ||||| ||||| |||| |||||||||| || || |||| ||||| ||||||||
Sbjct 1254 TGTAAAGAAAAAACAAGACAGATACATTCGTTGGATTAACCATGACTCCAACTTCCGTTA 1313
Query 1310 TGTCATCCATTCGGAACTTGTGAGAG 1335
| ||||| || ||||||| |||||||
Sbjct 1314 TATCATCTATCCGGAACTCGTGAGAG 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5