BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43040.1
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922830 jgi|Araly1|922830|scaffold_104111.1 448 2e-125
> Ahg922830 jgi|Araly1|922830|scaffold_104111.1
Length=353
Score = 448 bits (242), Expect = 2e-125
Identities = 291/314 (93%), Gaps = 5/314 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAAGAAGCTACTATGTTGTGGAGCCAAGAGCTTCTCCCAAAGAGCTAGATTACCG 60
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGTAAAGAAGCTACTATGTTGCGGAGCCAAGAGCTTCTCCCAAAGAGCTAGATTACCG 80
Query 61 GACGAAGGACGAGTCCGAGTTTATGTCGGAAACGATAGAGATACACAATGCAAGTTAGAG 120
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 81 GAGGAAGGACGAGTCCGAGTTTATGTCGGAAACGACAGAGATACACAATGCAAGTTAGAG 140
Query 121 ATGGATGCTGATTTCTTGACACATCCTTTGTTCGAGGATCTCCTCCGGTTATCCGAAGAA 180
|||||||||||||||||||| || || |||||||| |||||||| || ||||||||||||
Sbjct 141 ATGGATGCTGATTTCTTGACCCACCCATTGTTCGAAGATCTCCTTCGATTATCCGAAGAA 200
Query 181 GAGTTTGGTCACTCATACGACGGTGCTTTAAGGATCGCCTGCGAGATACAAGTTTTTC-T 239
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | |
Sbjct 201 GAGTTCGGTCACTCATACGACGGTGCTTTGAGGATCGCCTGCGAGATTCAAGTCTT-CAT 259
Query 240 AAACTTGATCCATTACCTTAAGTCCACGAGTCATGCTCCTCATTATTATATTGATGCATC 299
||||||||||||||||||||||||||||||||| |||||||||| || | ||||||||
Sbjct 260 GAACTTGATCCATTACCTTAAGTCCACGAGTCATTCTCCTCATTAC-AT-T-GATGCATC 316
Query 300 TCATTATCTTTATT 313
|||||||||| |||
Sbjct 317 TCATTATCTTCATT 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11103276399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5