BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43090.1
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797 1786 0.0
Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636 1543 0.0
Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063 1533 0.0
Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632 785 0.0
> Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797
Length=1215
Score = 1786 bits (967), Expect = 0.0
Identities = 1130/1210 (93%), Gaps = 5/1210 (0%)
Strand=Plus/Plus
Query 9 CATCGCTTCTACGTTTAAAGCTTTGTGTTTGTCTTTCTTGTTCATTGTTGTTGCAAGTCG 68
||| |||||| ||||||| ||||||||||||||| |||||||| |||||| |||||||||
Sbjct 9 CATTGCTTCTGCGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCGTTGTTGCTGCAAGTCG 68
Query 69 TCCGACTATCAGACCAAAGGTTTTCAACGTCCGACGCTATGGTTCTAGA-CCAGACGGAA 127
|| ||| || ||||||||||||||||| ||||||||| ||||||| | | ||||||||||
Sbjct 69 TCTGACCATGAGACCAAAGGTTTTCAATGTCCGACGCCATGGTTC-AAAGCCAGACGGAA 127
Query 128 AAACTGATAATGCCAATGCATTCACAAGTGTATGGAAACATGCATGCACAAGGATAAGTG 187
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 128 AAACTGATAATGCCAATGCATTCACAAGCGTATGGAAACGTGCATGCACAAGGATAAGTG 187
Query 188 GAAGTAGTAAAATCTACGTACCGAAAGGAACATTCTACCTCGGTGGTGTAGAGTTTGTGG 247
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 188 GAAGTAGTAAAATCTACGTACCGAAAGGAACATTCTACCTTGGTGGGGTAGAATTTGTGG 247
Query 248 GTCCATGCAAAAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAAACC 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GTCCATGCAAAAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAAACC 307
Query 308 CTAGGGACATTAAGCAGGACACATGGATCAACTTCCGGTACATCAACAATCTCTCTATCT 367
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 308 CTAGGGACATTAAGCTGGACACATGGATCAACTTCCGCTACATCAACAATCTCTCTATTT 367
Query 368 CCGGTTCCGGTACACTTGACGGCCAAGGAAAATACTCTTGGCCACTCAATGACTGCCACA 427
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 368 CCGGTTCCGGTACACTTGACGGCCAAGGGAAACACTCTTGGCCACTCAATGACTGCCACA 427
Query 428 AAAACACCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAACTCAA 487
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 428 AAAACACCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTTGTGAACAACTCAA 487
Query 488 GAATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTTAACTTCTTCTCTGTCC 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 GAATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTTAACTTCTTCTCCGTCC 547
Query 548 ATCGCTTCAACATTACCGGCGTCACTATAACAGCTCCCGGTGATAGCCCAAATACTGACG 607
||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct 548 ATCACTTCAACATTACCGGCATCACTATAACAGCTCCCGGTGATAGCCCCAATACCGACG 607
Query 608 GTATCAAAATGGGTTCTTGTAGCAACATTCACATCTCAAACACAAACATCGGTACCGGAG 667
|||||||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||
Sbjct 608 GTATCAAAATGGGTTCATGTAGCAACATTCACATCTCGAACACACACATTGGTACCGGAG 667
Query 668 ATGATTGTATTGCCATTCTCTCTGGGACCACTAACCTTGATATCTCTAACGTCAAGTGTG 727
| |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||
Sbjct 668 ACGATTGTATTGCCATTCTCTCTGGGACAACTAACCTCGATATCTCCAATGTCAAGTGTG 727
Query 728 GTCCTGGACATGGGATCAGTGTTGGAAGCTTAGGGAAGAACAAAGACGAGAAAGACGTAA 787
|||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| || |
Sbjct 728 GTCCCGGACATGGGATCAGTGTCGGAAGCTTAGGAAAGAACAAAGACGAGAAAGATGTGA 787
Query 788 AGCACTTAACGGTAAGAGACACAGTTTTCAACGGCACAAGCGATGGTATTCGGATCAAGA 847
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 788 AGGACTTAACGGTAAGAGACACAGTTTTCAACGGCACAAGCGATGGTATTCGGATAAAAA 847
Query 848 CTTGGGAATCTTCGGCTTCAAA-ACTCGTAGTTTCTAACTTCATATACGAGAATATTCAG 906
||||||||||||||||||| || | || |||||||||||||| |||| ||||||||||||
Sbjct 848 CTTGGGAATCTTCGGCTTCGAAGA-TCCTAGTTTCTAACTTCGTATATGAGAATATTCAG 906
Query 907 ATGATTGACGTTGGAAAACCGATCAACATTGATCAGAAGTATTGCCCTCACCCACCTTGT 966
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 907 ATGATTGACGTTGGAAAACCGATCAACATCGACCAGAAGTATTGTCCTCACCCACCTTGT 966
Query 967 GAACATGaaaaaaaGGGTAAGTCTCACGTTCAGATCCAAGACATTAAGTTAAAAAACATA 1026
||||||||| |||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 967 GAACATGAACAAAAGGGTGAGTCTCACGTTCAGATCCAAGACATTAAGTTAAAGAATATA 1026
Query 1027 TATGGAACGTCGAATAACATAGTGGCAGTGAATCTACAATGTAGCAAGAGCTTTCCGTGC 1086
|||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||
Sbjct 1027 TATGGAACGTCGAAAAACAAAGTGGCAGTGAATCTGCAATGTAGCAAGAGCTTTCCATGT 1086
Query 1087 AAGAATGTTGAACTAATTGATATTAACCTAAAGCATACTGGACTCGAGAAAGGTCATTCC 1146
|||||||||||||| ||||| |||||||||||||||| |||||||||| | |||| ||||
Sbjct 1087 AAGAATGTTGAACTGATTGACATTAACCTAAAGCATAATGGACTCGAGGATGGTCCTTCC 1146
Query 1147 ACAGCGATGTGCGAGAATGTTGACGGTTCTGTACGTGGTAAGAATGGTTCCTCAACATTG 1206
|| ||| | ||||||||| || |||||||| |||||||||||| |||||||||| |||||
Sbjct 1147 ACTGCGGTTTGCGAGAATATTAACGGTTCTATACGTGGTAAGA-TGGTTCCTCAGCATTG 1205
Query 1207 TCTAGATTGA 1216
|||||| |||
Sbjct 1206 TCTAGACTGA 1215
> Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636
Length=1215
Score = 1543 bits (835), Expect = 0.0
Identities = 1087/1208 (90%), Gaps = 19/1208 (2%)
Strand=Plus/Plus
Query 9 CATCGCTTCTACGTTTAAAGCTTTGTGTTTGTCTTTCTTGTTCATTGTTGTTGCAAGTCG 68
||| |||| | ||| ||| ||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 9 CATTGCTTTTGCGTGTAAGGCTTTGTGTGTGTCTCTCTTGTTCATCGTTGTTGCAAGTCG 68
Query 69 TCCGACTATCAGACCAAAGGTTTTCAACGTCCGACGCTATGGTTCTAGACCAGACGGAAA 128
||| || |||||||| |||||||| |||| |||| ||||||||| ||| ||||| ||
Sbjct 69 TCCCACCGGAAGACCAAAAGTTTTCAATGTCCAACGCCATGGTTCTAAACCGGACGGCAA 128
Query 129 AACTGATAATGCCAATGCATTCACAAGTGTATGGAAACATGCATGCACAA-GGATAAGTG 187
||| ||||| ||||||||||| ||||||||||||| | |||||||| || ||| |||||
Sbjct 129 AACGGATAACGCCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGAAGGGA-AAGTG 187
Query 188 GAAGTAGTAAAATCTACGTACCGAAAGGAACATTCTACCTCGGTGGTGTAGAGTTTGTGG 247
|||| ||||||||||| ||||| || |||||||||||||| |||||||||||||| ||||
Sbjct 188 GAAGAAGTAAAATCTATGTACCCAAGGGAACATTCTACCTTGGTGGTGTAGAGTTCGTGG 247
Query 248 GTCCATGCAAAAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAAACC 307
||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |
Sbjct 248 GTCCATGCAAAAATCCTATTGAATTCATCATCGATGGTACTTTATTGGCTCCTGCGAATC 307
Query 308 CTAGGGACATTAAGCAGGACACATGGATCAACTTCCGGTACATCAACAATCTCTCTATCT 367
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 308 CTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACAATCTCTCTATCT 367
Query 368 CCGGTTCCGGTACACTTGACGGCCAAGGAAAATACTCTTGGCCACTCAATGACTGCCACA 427
|||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||||||
Sbjct 368 CCGGTTCCGGTACACTTGACGGCCAAGGGAAACAATCTTGGCCACTAAATGACTGCCACA 427
Query 428 AAAACACCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAACTCAA 487
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 AAAACCCCAGTTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAACTCAA 487
Query 488 GA-ATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTTAACTTCTTCTCTGTC 546
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 -ATATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTTAACTTCTTCTCCGTC 546
Query 547 CATCGCTTCAACATTACCGGCGTCACTATAACAGCTCCCGGTGATAG-CCCAAATACTGA 605
|||| ||| |||||||| |||||||||||| |||||||||| ||||| ||||| || ||
Sbjct 547 CATCACTTTAACATTACTGGCGTCACTATAGCAGCTCCCGGCGATAGTCCCAAC-ACCGA 605
Query 606 CGGTATCAAAATGGGTTCTTGTAGCAACATTCACATCTCAAACACAAACATCGGTACCGG 665
||||||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 606 CGGTATCAAGATGGGTTCATGTAGTAACATTCACATCTCCAACACAAACATTGGTACCGG 665
Query 666 AGATGATTGTATTGCCATTCTCTCTGGGACCACTAACCTTGATATCTCTAACGTCAAGTG 725
||| |||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 666 AGACGATTGTATCGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAACGTTAAGTG 725
Query 726 TGGTCCTGGACATGGGATCAGTGTTGGAAGCTTAGGGAAGAACAAAGACGAGAAAGACGT 785
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 726 TGGTCCCGGACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAGAAAGACGT 785
Query 786 AAAGCACTTAACGGTAAGAGACA-CAGTTTTCAACGGCACAAGCGATGGTATTCGGATCA 844
||| |||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 786 GAAGGACTTAACGGTAAGAGACATC-GTGTTCAACGGCACAAGCGATGGTATTCGGATCA 844
Query 845 AGACTTGGGAATCTTCGGCTTCAAA-ACTCGTAGTTTCTAACTTCATATACGAGAATATT 903
|||||||||||||||| || || || | || | ||||| |||||| ||||||||||||||
Sbjct 845 AGACTTGGGAATCTTCAGCATCGAAGA-TCCTCGTTTCGAACTTCGTATACGAGAATATT 903
Query 904 CAGATGATTGACGTTGGAAAACCGATCAACATTGATCAGAAGTATTGCCCTCACCCACCT 963
|||||||||||||||||||| || |||||||| |||||||| ||||| ||||||||||||
Sbjct 904 CAGATGATTGACGTTGGAAAGCCAATCAACATCGATCAGAAATATTGTCCTCACCCACCT 963
Query 964 TGTGAACATGaaaaaaaGGGTA-AGTCTCACGTTCAGATCCAAGACATTAAGTTAAAAAA 1022
||||||||||| |||||||| | ||||||||||||| ||||||||| |||||||||| ||
Sbjct 964 TGTGAACATGAGAAAAAGGG-AGAGTCTCACGTTCAAATCCAAGACCTTAAGTTAAAGAA 1022
Query 1023 CATATATGGAACGTCGAATAACATAGTGGCAGTGAATCTACAATGTAGCAAGAGCTTTCC 1082
|||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 1023 CATATATGGAACGTCGAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGCTTTCC 1082
Query 1083 GTGCAAGAATGTTGAACTAATTGATATTAACCTAAAGCATACTGGACTCGA-GAAAGGT- 1140
|||||||||||| || |||||||| |||||| ||||||||| ||||||||| | |||
Sbjct 1083 GTGCAAGAATGTGGAGCTAATTGACATTAACATAAAGCATAATGGACTCGAAGCT-GGTT 1141
Query 1141 CATTCCACAGC-GATGTGCGAGAATGTTGACGGTTCTGTACGTGGTAAGAATGGTTCCTC 1199
| |||||| || | |||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 1142 C-TTCCACTGCTG-TGTGCGAGAATGTTGACGGTTCTGTACGCGGTAA-AATGGTTCCCC 1198
Query 1200 AACATTGT 1207
||||||||
Sbjct 1199 AACATTGT 1206
> Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063
Length=1215
Score = 1533 bits (830), Expect = 0.0
Identities = 1088/1210 (90%), Gaps = 27/1210 (2%)
Strand=Plus/Plus
Query 20 CGTTTAAAGCTTTGTGTTTGTCTTTCTTGTTCATTGTTGTTGCAAGTCGTCCGACTATCA 79
||||||| ||||||||| ||||| |||||||||||||||||||||||||||| || |
Sbjct 20 CGTTTAAGGCTTTGTGTGTGTCTCTCTTGTTCATTGTTGTTGCAAGTCGTCCCACCGGAA 79
Query 80 GACCAAAGGTTTTCAACGTCCGACGCTATGGTTCTAGACCAGACGGAAAAACTGATAATG 139
||||||| |||||||| |||| |||| ||||||||| ||| ||||| ||||| ||||| |
Sbjct 80 GACCAAAAGTTTTCAATGTCCAACGCCATGGTTCTAAACCGGACGGCAAAACGGATAACG 139
Query 140 CCAATGCATTCACAAGTGTATGGAAACATGCATGCACAA-GGATAAGTGGAAGTAGTAAA 198
|||||||||| ||||||||||||| | |||||||| || ||| ||||||||| ||||||
Sbjct 140 CCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGAAGGGA-AAGTGGAAGAAGTAAA 198
Query 199 ATCTACGTACCGAAA-GGAACATTCTACCTCGGTGGTGTAGAGTTTGTGGGTCCATGCAA 257
||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 199 ATCTATGTACC-AAAGGGAACATTCTACCTCGGTGGTGTAGAGTTCGTGGGTCCCTGCAA 257
Query 258 AAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAAACCCTAGGGACAT 317
||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 258 AAATCCTATTGAATTCGTCATCGATGGAACTTTATTGGCTCCTGCGAATCCTAGCGACAT 317
Query 318 TAAGCAGGACACATGGATCAACTTCCGGTACATCAACAATCTCTCTATCTCCGGTTCCGG 377
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 318 TAAGCAAGACACATGGATCAACTTTAGGTACATCAACAATCTCTCTATCTCCGGTTCCGG 377
Query 378 TACACTTGACGGCCAAGGAAAATACTCTTGGCCACTCAATGACTGCCACAAAAA-CACCA 436
|||||||||||||||||| ||| | ||||||||||||||||||||||||||||| | |||
Sbjct 378 TACACTTGACGGCCAAGGGAAACAATCTTGGCCACTCAATGACTGCCACAAAAATC-CCA 436
Query 437 ATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAACTCAAGA-ATCAAA 495
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 437 ATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAACTCAA-ATATCAAA 495
Query 496 GACATAACATCACTCAACAGCAAAATGGGACACTTTAACTTCTTCTCTGTCCATCGCTTC 555
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 496 GACATAACATCACTCAACAGCAAAATGGGACACTTCAACTTCTTCTCCGTCCATCACTTT 555
Query 556 AACATTACCGGCGTCACTATAACAGCTCCCGGTGATAG-CCCAAATACTGACGGTATCAA 614
|| ||||| ||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct 556 AATATTACTGGCGTCACTATAACAGCTCCCGGCGATAGTCCCAAC-ACCGACGGTATCAA 614
Query 615 AATGGGTTCTTGTAGCAACATTCACATCTCAAACACAAACATCGGTACCGGAGATGATTG 674
|||||||| ||||| |||||||||||||| |||||||| || ||||||||||| |||||
Sbjct 615 GATGGGTTCATGTAGTAACATTCACATCTCCAACACAAATATTGGTACCGGAGACGATTG 674
Query 675 TATTGCCATTCTCTCTGGGACCACTAACCTTGATATCTCTAACGTCAAGTGTGGTCCTGG 734
||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 675 TATCGCCATTCTTTCTGGAACCACTAACCTTGATATCTCTAACGTTAAGTGTGGTCCCGG 734
Query 735 ACATGGGATCAGTGTTGGAAGCTTAGGGAAGAACAAAGACGAGAAAGACGT-AAAGCACT 793
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 735 ACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAGAAAGACGTGAAAG-ACT 793
Query 794 TAACGGTAAGAGACA-CAGTTTTCAACGGCACAAGCGATGGTATTCGGATCAAGACTTGG 852
||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||
Sbjct 794 TAACGGTAAGAGACATC-GTGTTCAACGGCACAAGCGATGGTATTCGGATCAAGACCTGG 852
Query 853 GAATCTTCGGCTTCAAA-ACTCGTAGTTTCTAACTTCATATACGAGAATATTCAGATGAT 911
|||||||| ||||| || | || | ||||| |||||||| |||||||||||||| |||||
Sbjct 853 GAATCTTCAGCTTCGAAGA-TCCTTGTTTCGAACTTCATGTACGAGAATATTCAAATGAT 911
Query 912 TGACGTTGGAAAACCGATCAACATTGATCAGAAGTATTGCCCTCACCCACCTTGTGAACA 971
|||||||||||| || |||||||| |||||||||||||| || |||||||||||||||||
Sbjct 912 TGACGTTGGAAAGCCAATCAACATCGATCAGAAGTATTGTCCACACCCACCTTGTGAACA 971
Query 972 TGaaaaaaaGGGTA-AGTCTCACGTTCAGATCCAAGA-CATTAAGTTAAAAAACATATAT 1029
||| |||||||| | ||||||||||||| |||||||| | |||||||||| |||||||||
Sbjct 972 TGAGAAAAAGGG-AGAGTCTCACGTTCAAATCCAAGATC-TTAAGTTAAAGAACATATAT 1029
Query 1030 GGAACGTCGAATAACATAGTGGCAGTGAATCTACAATGTAGCAAGAGCTTTCCGTGCAAG 1089
|||||||| || |||| ||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 1030 GGAACGTCAAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGCTTTCCCTGCAAG 1089
Query 1090 AATGTTGAACTAATTGATATTAACCTAAAGCATACTGGACTCGA-GAAAGGT-CATTCCA 1147
||||| || || ||||| |||||| ||||| ||| ||||||||| || ||| ||| |||
Sbjct 1090 AATGTGGAGCTCATTGACATTAACATAAAGAATAATGGACTCGAAGAT-GGTTCAT-CCA 1147
Query 1148 CAGCGATGTGCGAGAATGTTGACGGTTCTGTACGTGGTAAGAATGGTTCCTCAACATTGT 1207
| ||| |||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 1148 CTGCGGTGTGTGAGAATGTTGATGGTTCTGTACGCGGTAA-AATGGTTCCTCAACATTGT 1206
Query 1208 CTAGA-TTGA 1216
|| || ||||
Sbjct 1207 CT-GAATTGA 1215
> Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632
Length=1101
Score = 785 bits (425), Expect = 0.0
Identities = 571/641 (89%), Gaps = 11/641 (2%)
Strand=Plus/Plus
Query 581 CTCCCGGTGATAG-CCCAAATACTGACGGTATCAAAATGGGTTCTTGTAGCAACATTCAC 639
||||||| ||||| ||| || || ||||||||||| |||||||| ||||| |||||||||
Sbjct 467 CTCCCGGCGATAGTCCC-AACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCAC 525
Query 640 ATCTCAAACACAAACATCGGTACCGGAGATGATTGTATTGCCATTCTCTCTGGGACCACT 699
||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 526 ATCTCCAACACAAACATTGGTACTGGAGACGATTGTATCGCCATTCTCTCTGGAACCACT 585
Query 700 AACCTTGATATCTCTAACGTCAAGTGTGGTCCTGGACATGGGATCAGTGTTGGAAGCTTA 759
||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 586 AACCTCGATATCTCTAATGTTAAGTGTGGTCCTGGACATGGGATCAGTGTCGGAAGCTTA 645
Query 760 GGGAAGAACAAAGACGAGAAAGACGT-AAAGCACTTAACGGTAAGAGACACAGTTTTCAA 818
|| ||||||||||||||||||||||| |||| ||||||| ||||||||| |||| ||
Sbjct 646 GGAAAGAACAAAGACGAGAAAGACGTGAAAG-ACTTAACAGTAAGAGACGTTTTTTTTAA 704
Query 819 CGGCACAAGCGATGGTATTCGGATCAAGACTTGGGAATCTTCGGCTTCAAAACTCGTAGT 878
||| || ||||||||||||||||||||||||||||||||||| || |||||| || | ||
Sbjct 705 CGGTACTAGCGATGGTATTCGGATCAAGACTTGGGAATCTTCAGCCTCAAAAATCCTCGT 764
Query 879 TTCTAACTTCATATACGAGAATATTCAGATGATTGACGTTGGAAAACCGATCAACATTGA 938
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 765 TTCGAACTTCGTATACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGA 824
Query 939 TCAGAAGTATTGCCCTCACCCACCTTGTGAACATGaaaaaaaGGGTA-AGTCTCACGTTC 997
||| || ||||| ||||||||||||||||||||||| ||||||| | ||||||||||||
Sbjct 825 TCAAAAATATTGTCCTCACCCACCTTGTGAACATGAGCAAAAGGG-AGAGTCTCACGTTC 883
Query 998 AGATCCAAGACATTAAGTTAAAAAACATATATGGAACGTCGAATAACATAGTGGCAGTGA 1057
| ||||||||| |||||||||| |||||||||||||||||||| |||| ||||||| |||
Sbjct 884 AAATCCAAGACCTTAAGTTAAAGAACATATATGGAACGTCGAAGAACAAAGTGGCAATGA 943
Query 1058 ATCTACAATGTAGCAAGAGCTTTCCGTGCAAGAATGTTGAACTAATTGATATTAACCTAA 1117
|||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||||| |||
Sbjct 944 ATCTGCAATGTAGCAAAAGTTTTCCGTGCAAGAATGTGGAACTGATTGACATTAACATAA 1003
Query 1118 AGCATACTGGACTCGA-GAAAGGT-CATTCCACAGCGATGTGCGAGAATGTTGACGGTTC 1175
|||||| ||||||||| | ||| | |||||| ||| ||||||||||||||||||||||
Sbjct 1004 AGCATAATGGACTCGAAGGT-GGTTC-TTCCACTGCGGTGTGCGAGAATGTTGACGGTTC 1061
Query 1176 TGTACGTGGTAAGAATGGTTCCTCAACATTGTCTAGATTGA 1216
|||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1062 TGTACGCGGTAA-AATGGTTCCTCAACATTGTCTAAATTGA 1101
Score = 614 bits (332), Expect = 6e-175
Identities = 403/438 (92%), Gaps = 2/438 (0%)
Strand=Plus/Plus
Query 20 CGTTTAAAGCTTTGTGTTTGTCTTTCTTGTTCATTGTTGTTGCAAGTCG-TCCGACTATC 78
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||| || ||
Sbjct 20 CGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCATTGTTGTTGCAAGTCGTTCC-ACCGTC 78
Query 79 AGACCAAAGGTTTTCAACGTCCGACGCTATGGTTCTAGACCAGACGGAAAAACTGATAAT 138
|||||||| ||||||||||||| |||| ||||||||| ||| |||||||||||||||||
Sbjct 79 AGACCAAAAGTTTTCAACGTCCAACGCCATGGTTCTAAACCGGACGGAAAAACTGATAAC 138
Query 139 GCCAATGCATTCACAAGTGTATGGAAACATGCATGCACAAGGATAAGTGGAAGTAGTAAA 198
||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||
Sbjct 139 GCCAATGCATTCACAAGTGTATGGAGCCGTGCATGCAGAAGGAAAAGTGGAAGTAGTAAA 198
Query 199 ATCTACGTACCGAAAGGAACATTCTACCTCGGTGGTGTAGAGTTTGTGGGTCCATGCAAA 258
|| || ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 199 ATATATGTACCAAAAGGAACATTCTACCTCGGTGGTGTAGAGTTCGTGGGTCCATGCAAA 258
Query 259 AATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAAACCCTAGGGACATT 318
||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 259 AATCCTATTGAATTTATTATCGATGGAACTTTATTGGCTCCTGCAAATCCTAGCGACATT 318
Query 319 AAGCAGGACACATGGATCAACTTCCGGTACATCAACAATCTCTCTATCTCCGGTTCCGGT 378
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||
Sbjct 319 AAGCAAGACACATGGATCAACTTTAGGTACATCAACGATCTCTCTATCTCCGGTTCTGGT 378
Query 379 ACACTTGACGGCCAAGGAAAATACTCTTGGCCACTCAATGACTGCCACAAAAACACCAAT 438
||||||||||| ||||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 379 ACACTTGACGGTCAAGGGAAACAGTCTTGGCCACTCAATGACTGCCACAAAAACCCCAAT 438
Query 439 TGTCCTAAACTAGCTATG 456
||||||||||||||||||
Sbjct 439 TGTCCTAAACTAGCTATG 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5