BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43130.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473756 jgi|Araly1|473756|fgenesh2_kg.1__3710__AT1G43130.1 1526 0.0
> Ahg473756 jgi|Araly1|473756|fgenesh2_kg.1__3710__AT1G43130.1
Length=985
Score = 1526 bits (826), Expect = 0.0
Identities = 896/929 (96%), Gaps = 8/929 (1%)
Strand=Plus/Plus
Query 3 GGTCAAACAAAATCAGAGATCTGGTCTGACTAAACCAGACGAAGAACCAATTTCAACCTC 62
|||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1 GGTCAAACAAAATCGGAGATCTGGTCCGACTAAACCAGAC---TAACCAATTTCAACCTC 57
Query 63 CTCGCCGGCA-AAAATGGCGGAAGGA-AAAGAAGCTACGACGAGTTCGCTGAGTCAAGGA 120
|||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 58 CTCGCCGG-AGAAAATGGCGGAA-GACAAAGAAGCTACGACGAGTTCGCTGAGTCAAGGA 115
Query 121 CTCACTCCTCACCAAGACCCCGACGATGCTCCCAAGTCTCCTCCCAACTCTCCAAATTCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 CTCACTCCTCACCAAGACCCCGACGATGCTCCCAAGTCTCCTCCCAACTCTCCAAATTCT 175
Query 181 TCTACTCGCAAGGCTTGTTATGGGGTTCTACAGAGTTGGGTGTCTAAGAAGTTTATGACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTACTCGCAAGGCTTGTTATGGGGTTCTACAGAGTTGGGTGTCTAAGAAGTTTATGACT 235
Query 241 GGATTTGTCGTACTCTTTCCTGTAGCTGTTACATTCCTCATCACTTGGTGGTTTATCCAG 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GGATTTGTTGTACTCTTTCCTGTTGCTGTTACATTCCTCATCACTTGGTGGTTTATCCAG 295
Query 301 TTCGTTGATGGTTTCTTCAGTCCGATATACGAGAACCTTGGTGTTGACATATTTGGACTT 360
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 296 TTCGTTGATGGGTTCTTCAGTCCGATATACGAGAATCTTGGTGTTGACATATTTGGACTT 355
Query 361 GGGTTCATTACATCTGTACTTTTCACTTTCTTTGTCGGAATATTTGCTTCGTCGTGGTTG 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 356 GGGTTCATTACATCTGTACTTTTCACTTTCTTTGTTGGAATATTTGCTTCGTCGTGGCTG 415
Query 421 GGTTCTACAGTTTTCTGGCTTGGGGAGCAGTTTATAAGGCGAATGCCCTTTGTCAAGCAC 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 416 GGTTCTACGGTTTTCTGGCTTGGGGAGCAGTTTATAAGGCGAATGCCCTTTGTGAAGCAC 475
Query 481 ATATATTCAGCTTCTAAGCAAATTAGCACTGCTATTTCTCCAGACCAAAACACTACTGCC 540
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 476 ATATATTCAGCTTCTAAACAAATTAGCACTGCTATTTCTCCGGACCAAAACACTACTGCC 535
Query 541 TTTAAAGAGGTAGCAATCATCCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATT 600
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTAAAGAGGTAGCAATTATTCGTCACCCTCGTATTGGTGAATACGCATTTGGATTTATC 595
Query 601 ACATCATCGGTGACACTTCAGACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACATCATCGGTGACACTTCAGACTGACCATGGAGAAGAAGAGTTATGTAGTGTGTATGTG 655
Query 661 CCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CCAACGAATCATCTGTACATAGGAGATGTGTTTCTGGTGAGTAGCGAAGAAATCATAAGG 715
Query 721 CCAAATTTATCGATCCGAGAAGGAATAGAGATCATAGTATCGGTGGGGATGACAATGCCG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCAAATTTATCGATCCGAGAAGGAATAGAGATCATAGTATCGGTGGGGATGACAATGCCG 775
Query 781 CAAGTTATATCTCATGTGGACAGGACAACAAACAGAACTCCTCACCAACACAGTCTCAGG 840
||||| |||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 776 CAAGTGATATCTCATGCGGACAGGACAACAAATATAACTCCTCACCAACACAGTCTCAGG 835
Query 841 GTTCCTCTCAACAGACTTTAGTTAATAGCTGTATGGCCTCTATACCGTGTAAAGATAGTT 900
||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||
Sbjct 836 GTTCCTCTCAACAGACTTTAGTTAATAGCAGTATGGCCTCTCTACCTTGTAAAGATAGTT 895
Query 901 TACGCGTCGTGCTCAATCGTGAATTATTT 929
||||||| ||||||||||||||||| |||
Sbjct 896 TACGCGTTGTGCTCAATCGTGAATT-TTT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5