BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43190.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913547 jgi|Araly1|913547|Al_scaffold_0001_3801 2194 0.0
Ahg922837 jgi|Araly1|922837|scaffold_104118.1 187 2e-46
> Ahg913547 jgi|Araly1|913547|Al_scaffold_0001_3801
Length=1299
Score = 2194 bits (1188), Expect = 0.0
Identities = 1262/1299 (97%), Gaps = 0/1299 (0%)
Strand=Plus/Plus
Query 131 ATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAAAT 190
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGAATCTTCCAAAGTCATTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAAAT 60
Query 191 GATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCA 250
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GATTTGCTTCAACTTTTTCAACCATTTGGGGTTATAACTAAGCTTGTGATGCTCAGGGCA 120
Query 251 AAGAATCAGGCTCTTCTCCAAATGCAAGATGTTTCTTCTGCAGTTAGTGCTCTTCAGTTT 310
||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||
Sbjct 121 AAGAATCAGGCTCTTCTTCAAATGCAAGATGTTTCTTCAGCAATCAGTGCTCTTCAGTTT 180
Query 311 TTTACTAATGTTCAGCCAACTATAAGAGGTAGGAATGTGTATGTCCAATTCTCTTCTCAC 370
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTTACTAATGTTCAGCCAACCATAAGAGGTAGGAATGTGTATGTCCAATTCTCGTCTCAC 240
Query 371 CAAGAATTGACAACGATAGAGCAGAATATTCATGGAAGGGAAGATGAGCCGAACCGTATT 430
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 241 CAAGAATTGACAACGATAGAGCAGAATATTCATGGACGGGAAGATGAGCCGAATCGTATT 300
Query 431 CTCTTAGTCACAATCCATCACATGCTGTATCCAATTACTGTTGACGTCCTGCATCAAGTT 490
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 CTCTTAGTCACAATCCATCACATGCTGTATCCAATTACTGTTGACGTGCTGCATCAAGTT 360
Query 491 TTTTCTCCCTATGGATTTGTCGAGAAGCTCGTCACTTTCCAGAAGTCTGCTGGTTTTCAA 550
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 TTTTCTCCCTATGGATTTGTCGAGAAGCTTGTCACTTTCCAGAAGTCTGCTGGTTTTCAA 420
Query 551 GCTCTTATACAGTATCAGGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGGGT 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTCTTATACAGTATCAGGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGGGT 480
Query 611 CGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAACCTTGAGGAGCTG 670
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGTAACATATATGATGGGTGTTGTCAGTTGGATATCCAGTTCTCAAACCTTGAGGAGCTG 540
Query 671 CAAGTAAATTACAACAATGATCGATCTAGGGATTATACAAATCCAAACCTGCCTGCAGAA 730
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 541 CAAGTAAATTACAACAATGATCGATCTAGAGATTATACAAACCCAAACCTGCCTGCGGAG 600
Query 731 CAAAAAGGCCGTTCATCGCATCCTTGCTATGGTGATACAGGAGTGGCATATCCTCAGATG 790
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 601 CAAAAAGGCCGTTCATCGCATCCTGGCTATGGTGATGTAGGAGTGGCATATCCTCAGATG 660
Query 791 GCAAACACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGC 850
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GCAAACACATCTGCGATTGCAGCGGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGC 720
Query 851 ACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATAGTATTGATGAAGAT 910
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 721 ACAAATGATAGGTGTACAGTCCTTGTCTCCAACCTGAATGCAGATAGTATTGATGAGGAT 780
Query 911 AAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAAC 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAAC 840
Query 971 AAACCTGACCATGCCCTTGTCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACAT 1030
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 AAACCTGACCATGCCCTTGTCCAAATGGGCGATGGTTTCCAAGCCGAACTTGCAGTACAT 900
Query 1031 TTCCTCAAGGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCA 1090
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TTCCTCAAGGGAGCGGTGCTGTTTGGTAAGCGGCTAGAAGTAAACTTCTCAAAGCATCCA 960
Query 1091 AATATAACACCAGGCACAGACTCTCATGATTATGTAAACTCTAACCTGAACCGCTTCAAC 1150
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 961 AACATAACACCAGGCACAGACTCTCATGATTACGTAAACTCTAACCTGAACCGCTTCAAC 1020
Query 1151 CGCAATGCTGCAAAGAATTACCGCTATTGCTGCTCCCCTACAAAGATGATTCACTTATCG 1210
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGCAATGCTGCAAAGAACTACCGCTATTGCTGCTCCCCTACAAAGATGATTCACTTATCG 1080
Query 1211 ACTCTTCCTCAAGACGTGACAGAGGAGGAAGTGATGAACCATGTCCAAGAACACGGTGCA 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 ACTCTTCCTCAAGACGTGACAGAGGAGGAAGTGATGAACCATGTCCAAGAACACGGTGCA 1140
Query 1271 GTAGTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGCAAGCTCTGGTACAGTTTGAG 1330
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1141 ATAGTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGCAAGCTCTAGTGCAGTTTGAG 1200
Query 1331 AACGAGGAGGAAGCTGCGGAAGCATTGGTATGCAAGCACGCGACTTCTCTAGGCGGATCA 1390
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 AACGAGGAGGAAGCTGCGGAAGCATTGGTGTGCAAGCACGCGACTTCTCTAGGCGGATCA 1260
Query 1391 ATTATCAGAATCTCCTTCTCCCAGCTACAGACGATTTAA 1429
|||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTATCAGAATCTCCTTCTCCCAGCTACAGACGATTTAA 1299
> Ahg922837 jgi|Araly1|922837|scaffold_104118.1
Length=208
Score = 187 bits (101), Expect = 2e-46
Identities = 163/190 (86%), Gaps = 15/190 (8%)
Strand=Plus/Minus
Query 1504 AGGATTAATGAATGTATGTTGCTTTTAACTTAAAACTCTCTGCTCTTTGTTCTGTTCTCT 1563
||||||||||||||||||||||||||||||| || | ||| ||||| ||||
Sbjct 208 AGGATTAATGAATGTATGTTGCTTTTAACTT--AA-----TACTC----TTCTG--CTCT 162
Query 1564 CTGttttttctttttAACGTGTTGGTTTTAATTGTTTGTCTTGATTTCATGGGCTTAACA 1623
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 CT-TTTTTTCTTTTCAACGTGTTGGTTTTAATTGTTTGTCTTGATTTCATGGGCTTAACA 103
Query 1624 TTTAATGGTAATAAAGACATAAGaaaaaaaaTGGTAGAGACAATTGTAGTGGTGGTTGTA 1683
|||||||||||||||||||||||||| |||||||| |||| | |||||||| | ||
Sbjct 102 TTTAATGGTAATAAAGACATAAGAAAGAAAATGGTCGAGAGACGCGTAGTGGTAGATGG- 44
Query 1684 TAATAGTGTT 1693
||||| ||||
Sbjct 43 TAATATTGTT 34
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5