BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43245.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314093 jgi|Araly1|314093|fgenesh1_pm.C_scaffold_1002873 2145 0.0
> Ahg314093 jgi|Araly1|314093|fgenesh1_pm.C_scaffold_1002873
Length=1704
Score = 2145 bits (1161), Expect = 0.0
Identities = 1513/1681 (90%), Gaps = 32/1681 (2%)
Strand=Plus/Plus
Query 48 ATGGAGATACGCGCGGCGGAGGATATCGAAATCCGCACAGATCTATTTCCGCCactctct 107
|||||||||| |||||||||||||||||||||| |||||||| |||| || || || |||
Sbjct 1 ATGGAGATACTCGCGGCGGAGGATATCGAAATCGGCACAGATTTATTCCCACCGCTTTCT 60
Query 108 ccactcgcttcctctctctacgactcattcctctcctctcactgctcctcctgcttctcc 167
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CCACTCGCTTCCTCTCTCTACGACTCCTTCCTCTCCTCTCACTGCTCCTCCTGCTTCTCC 120
Query 168 cttctccccccatctccgccgcaacctctctACTGCTCCGCCGCATGCTCCCTCACCGAT 227
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCTCCCACCATCTCCGCCGCAGCCTCTCTACTGCTCCGCCGCATGCTCCCTCACCGAT 180
Query 228 TCATTCACCAATTCCCCTCAATTCCCACCGGAGATAACACCAATCCTCCCCTCCGACATC 287
||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 TCATTAACCAATTTCCCTCAATTCCCACCGGAGATAACCCCAATTCTCCCCTCCGACATC 240
Query 288 CGTACATCTCTCCATCTCCTCAATTCCACCGCCGTCGACACTTCCTCATCTCCC-CACCG 346
|||||| |||||| ||||||||||||||| | |||||||||||||||||| ||| |||||
Sbjct 241 CGTACAGCTCTCCGTCTCCTCAATTCCACAGTCGTCGACACTTCCTCATC-CCCGCACCG 299
Query 347 TCTTAACAACCTTCTCACTAATCACCACCTCCTCATGGCTGATCCTTCCATCTC-CGTCG 405
|||||| |||||||||||||||||||||||||||||| ||| ||||| |||| | |||
Sbjct 300 TCTTAATGGCCTTCTCACTAATCACCACCTCCTCATGGCAGATTCTTCCTTCTCAC-TCG 358
Query 406 CTATTCACCACGCCGCCAACTTCATAGCCACCGTTATTAGATCAAACCGGAAAAACACAG 465
|||| ||||||||||||| || |||||||| ||| ||||||||||||||||||||||||
Sbjct 359 CTATCCACCACGCCGCCAGTTTTATAGCCACTGTTCTTAGATCAAACCGGAAAAACACAG 418
Query 466 AGTTGGAAGAAGCAGCTATATG-TGCTGTGCTAACAAACGCCGTTGAGGTGCACGATAGC 524
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 419 AGTTGGAAGAAGCAGCTATATGCT-CTGTGCTAACAAACGCCGTTGAGGTGCAAGATAGC 477
Query 525 AACGGACTAGCTCTTGGAATCGCTCTCTATAATTCAAGCTTCTCTTGGATTAACCATAGC 584
|||||||| | ||||||||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct 478 AACGGACTTGTTCTTGGAATCGCTCTTTATGATTCAAGATTCTCTTGGATTAACCATAGC 537
Query 585 TGCTCTCCAAACTCTTGTTACCGTTTCGTCAACAACAGGACGTCGTATCATGATGTTCAT 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 538 TGCTCTCCAAACTCTTGTTACCGTTTCGTCAACAACACGACGTCGTATCATGATGATCTT 597
Query 645 GTC-A-CCAA-CA-CA-GAAACATCGTC-A-AACTTAG--A-ATTGCA-GGAAC-AAG-T 691
| | | |||| | || ||| ||| | ||| || | ||| | ||| ||
Sbjct 598 GCCTATCCAATAACCATTCCTCAT-GTCAACAACACAGAAACATT--ATCCAACTTAGAA 654
Query 692 TTG-TGGTACTAGTTTGAACAGTGGTAATGGAAATGGACCAAAGTTGATTGTTAGAAGTA 750
||| || || ||| ||||| | | ||| ||||||||||| |||||| ||||| ||
Sbjct 655 TTGCAGGAACAAGTAAGAACAAT-G----GGATATGGACCAAAGGTGATTGCTAGAAATA 709
Query 751 TCAAGAGGATTAAGAGTGGTGAAGAGATCACTGTATCTTATATTGACTTACTTCAACCCA 810
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
Sbjct 710 TTAAGAGGATTAAGAGTGGTGAAGAGATCACTGTATCGTATATCGACTTACTTCAACCGA 769
Query 811 CGGGATTGAGACAGTCAGATTTGTGGTCGAAATATCGATTTATGTGTAACTGTGGACGAT 870
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 CGGGATTGAGGCAGTCAGATTTGTGGTCGAAATATCGATTTATGTGTAACTGTGGACGAT 829
Query 871 GTGCAGCTTCACCTCCAGCTTATGTGGACTCTATTTTAGAGGGAGTTCTTACGTTGGAGA 930
||||||| || ||||| |||||||||||||| ||||||||||||||||| |||| ||
Sbjct 830 GTGCAGCATCGCCTCCGGCTTATGTGGACTCGGTTTTAGAGGGAGTTCTTGTGTTGAAGC 889
Query 931 GTGAA-AAGACAACCGTTGGTCACTTTGATGGAAGTACTAACAAAGATGAAGCAGTGGGA 989
|||| || |||||||||| | || | |||||| || ||||||||||||||||||| |
Sbjct 890 CTGAAGAA-ACAACCGTTGATTACCATCATGGAACCACCAACAAAGATGAAGCAGTGGCA 948
Query 990 AAGATGAATGATTATATCCAAGAAGCTATAGATGATTTTTTATCGGACAATATCGATCCT 1049
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 949 AAGATGACTGATTATATCCAAGAAGCCATAGATGATTTTTTATCGGACAATATTGATCCC 1008
Query 1050 AAAACATGTTGTGAGATGATTGAGAGTGTTCTGCATCACGGCATCCAGTTCAAGGAAGAC 1109
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||| | ||||
Sbjct 1009 AAAACATGTTGTGAGAAGATCGAGAGTGTGCTGCATCACGGCATCCAGTTCAAAGCAGAC 1068
Query 1110 TCACAGCCTCATTGTCTGCGGTTACATGCGTGTCACTACGTTGCTCTGAATGCGTACATT 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1069 TCACAGCCTCATTGTCTGCGGTTACATGCGTGTCACTACGTTGCTCTGAATGCTTACATT 1128
Query 1170 ACTCTAGCTACTGCTTACAGAATCCGTTCGATTGATTCTGAAACTGGCATTGTTTGTGAC 1229
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1129 ACTCTGGCTACTGCTTACAGAATCCGTTCGATTGATTCTGAAACTGGCATTGTTTTTGAC 1188
Query 1230 ATGAGCAGGATAAGTGCAGCCTACTCTTTATTCCTTGCTGGTGTTTCTCACCATCTCTTT 1289
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1189 ATGAGCAGGATAAGTGCAGCCTACTCTTTATTCCTTGCAGGTGTTTCTCACCATCTCTTT 1248
Query 1290 TGTGCGGAACGTTCTTTTGCTATATCTGCAGCAAAATTCTGGAAAAATGCTGGAGAATTA 1349
| ||| || | || | ||||||| ||||| ||||| |||||||||||||||||||||| |
Sbjct 1249 TCTGCAGATCCTTGTCTTGCTATTTCTGCCGCAAATTTCTGGAAAAATGCTGGAGAATCA 1308
Query 1350 TTGTTTGATTTGGCCCCGAAGCTTTT-GATGGAATTATCTGTAGAATCTGATGTCAAATG 1408
||||| ||| |||||| |||| ||| | ||||| ||||||||||||||||||||||||
Sbjct 1309 TTGTTAGATCTGGCCCGGAAG-TTTCCGCTGGAACCATCTGTAGAATCTGATGTCAAATG 1367
Query 1409 CACGAAATGTCTTATGCTTGAAACCTCTAATTCACACAGAGATATCAAAGAAAAGTCTAG 1468
||| ||||||||||| |||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 1368 CACCAAATGTCTTATTCTTGGAACCCCCAATTCACACAAAGATATCAAAGAAAAGTCTAG 1427
Query 1469 GCAGATTCTGAGTTGTGTCAGAGACATCTCACAAGTCACATGGAGTTTCCTCACTCGCGG 1528
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1428 GCAGATTCTGAGTTGTGTCACAGACATCTCACAAGTCACATGGAGTTTCCTCACACGCAG 1487
Query 1529 TTGCCCTTACCTGGAAAAGTTTAGGAGTCCAGTTGATTTCAGCTTGACTAGGACCAATGG 1588
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1488 TTGCCCTTACCTGCAAAAGTTTAGGAGTCCAGTTGATTTCAGCTTGACGAGGACCATTGG 1547
Query 1589 CGAGAGAGAAGAATCGAGTAAGGATCAAACGGTAAACGTACTTTTACTCTCTTCTCACTG 1648
| ||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||
Sbjct 1548 CAAGAGAGAAGAATCGAGTGAGGATCAAACGGTAAATGTTCTTTTACTCTCTTTTCACTG 1607
Query 1649 CTTACTATACGCAGACCTTCTGACTGATTTATGTTACGGTCAGAAATCACATTTGGTGTC 1708
|||||| ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||
Sbjct 1608 CTTACTCTACGCAGACCTTCTGGCTGATTTATGTTACGGTGAGAAGTCACATTTGGTGTC 1667
Query 1709 T 1709
|
Sbjct 1668 T 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5