BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43560.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922840 jgi|Araly1|922840|scaffold_104121.1 658 0.0
> Ahg922840 jgi|Araly1|922840|scaffold_104121.1
Length=571
Score = 658 bits (356), Expect = 0.0
Identities = 500/564 (89%), Gaps = 31/564 (5%)
Strand=Plus/Plus
Query 39 GAAGCTTCTTCAATGGCGATTTCTCTCGCCACCGCCTATATCTCTCCATGTTTTACACCG 98
||||||||||||||||||||||||||| | ||| | |||| || |||| ||||| | |||
Sbjct 13 GAAGCTTCTTCAATGGCGATTTCTCTCTCAACCTCATATACCTATCCACGTTTTTCGCCG 72
Query 99 GAATCGTCTAATTCCGCTTCACCATCACG-A----A----CTCTTTCCTCCGTACGATTA 149
|||||| ||||||||| ||| |||||||| | | |||||||||||||||| |||
Sbjct 73 GAATCGCCTAATTCCGTTTCGCCATCACGAACGCTATCTTCTCTTTCCTCCGTACGCTTA 132
Query 150 CCTTCTCAGATTCGCCGA-T-----T-CG----GA-AGTGTTCAATCGCCGTC-T--TCG 194
|| |||| ||||||||| | | || || ||||||||||||||||| | |||
Sbjct 133 CCGGCTCAAATTCGCCGATTCGGAATCCGCCACGAGAGTGTTCAATCGCCGTCGTCGTCG 192
Query 195 TCTACTCGCTTCGCTCCACTCACTGTAAGAGCAGCAAAGAAGCAAACTTTCAACTCTTTT 254
||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 193 ACTAATCGCTTCGCTCCACTCACTGT--TAG-AGCAAAGAAGCAAACTTTCAACTCTTTT 249
Query 255 GATGATTTGTTGCAGAACTCTGATAAACC-TGTACTTGTAGACTTCTATGCTACTTGGTG 313
|||||| |||||||||| ||||||||||| | |||| |||||||||||||| ||||||||
Sbjct 250 GATGATCTGTTGCAGAATTCTGATAAACCAT-TACTAGTAGACTTCTATGCCACTTGGTG 308
Query 314 TGGTCCATGTCAGCTTATGGTACCTATACTCAATGAAGTGAGTGAAACACTGAAAGATAT 373
|||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 309 TGGTCCCTGCCAGCTTATGGTACCTATACTCAACGAAGTGAGTGAAACTCTGAAAGATA- 367
Query 374 A-ATTGCAGTTGTGAAAATTGATACTGAGAAGTACCCAAGTCTTGCTAACAAATACCAGA 432
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 368 AGATTGCAGTTGTGAAAATCGATACTGAAAAGTACCCAAGTCTTGCTAACAAATACCAGA 427
Query 433 TTGAGGCTTTGCCCACATTCATCTTATTCAAAGACGGCAAACTCTGGGACCGTTTCGAGG 492
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 428 TTGAGGCTTTACCCACATTCATCTTATTCAAAGACGGCAAACTCTGGGATCGTTTCGAGG 487
Query 493 GTGCCTTGCCAGCGAACCAACTCGTTGAGCGTATTGAGAATTCTTTGCAAGTGAAACAGT 552
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 488 GTGCCTTGCCAGCGAACCAACTCGTTGAACGTATTGAGAATTCTTTGCAAGTGAAACAAT 547
Query 553 AGGTTTGAGAAACCAAGAAAACTT 576
||||||||||||||||||||||||
Sbjct 548 AGGTTTGAGAAACCAAGAAAACTT 571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5