BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43580.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473764 jgi|Araly1|473764|fgenesh2_kg.1__3718__AT1G43580.1 2041 0.0
> Ahg473764 jgi|Araly1|473764|fgenesh2_kg.1__3718__AT1G43580.1
Length=1412
Score = 2041 bits (1105), Expect = 0.0
Identities = 1300/1391 (93%), Gaps = 25/1391 (2%)
Strand=Plus/Plus
Query 4 AATTTCCGCAATTGTTGCAAATTTCAGAC--AAAACTTTCCttttttttGTCCTTTTCAG 61
|||||||||| |||||||||||||||||| |||| | ||| || | || ||||
Sbjct 1 AATTTCCGCATTTGTTGCAAATTTCAGACAAAAAAAAAAGC-TTTCCTT-T--TTATCAG 56
Query 62 TCATTGTTCCGTCTTCGACCACCACCGTCAAATCCGGCGACCCATCAACCTTCAGATGAC 121
|| ||| ||||||||| ||| ||||| |||||||| | | | | | | ||||||
Sbjct 57 TCTTTG-TCCGTCTTCTACCTCCACCATCAAATCC-G-G-----T-GA-C--C-GATGAC 103
Query 122 TAAAGGTGGACTTGGAATAGCCGCGATGTCATACGTGGTAATCGATTACATGCGTTACGT 181
|| |||||||||||| || || ||| |||||||||||| |||||||||||||||||||||
Sbjct 104 TAGAGGTGGACTTGGGATCGCTGCGCTGTCATACGTGGCAATCGATTACATGCGTTACGT 163
Query 182 GTCACCGGTGTGGCATTCTCGTCTTATGCCAGTTCTTTGGTCTGTTCTTGCTATCGCCGT 241
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 164 GTCACCAGTGTGGCATTCTCGTCTTATGCCAGTTCTTTGGTCGGTTCTTGCTATCGCCGT 223
Query 242 CGTCACTCGTGTTCTGTTCTATAAACACTGGTCTAAAGAGCTACGAGCAGCTATTCCTTT 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 GGTCACTCGTGTTCTGTTCTATAAACACTGGTCTAAAGAGCTACGAGCAGCTATTCCTTT 283
Query 302 CCTTGGTTCTATCGTATTCCTT-CTCTGTGCTCTTCTCTTTGAAGCTCTTTGTGTTCGCT 360
||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 284 TCTTGGTTCTGTCGTATT-CTTGCTCTGTGCTCTTCTCTTTGAAGCTCTTTGTGTTCGCT 342
Query 361 CTGTTACTGCTGTTCTTGGCTTAGATTGGCACCGGGAAACACCTCCACTTCCTGATACAG 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 CTGTTACTGCTGTTCTTGGCTTAGATTGGCACCGGGAAACGCCTCCACTTCCTGATACAG 402
Query 421 GCCAATGGTTCTTACTTGCACTAAACGAGAGCCTTCCCGGGAC-ACTTGTGGAAATCCTA 479
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 403 GCCAATGGTTCTTACTTGCACTAAACGAGAGCCTTCCCGGGACTA-TTGTGGAAATCTTG 461
Query 480 AGAGCACATATCATTGGATTGCATCATTTTCTTATGTTGTTTATAATGTTGGGTTTCTCG 539
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 462 AGAGCTCATATCATTGGATTGCATCATTTTCTTATGCTGTTTATAATGTTGGGTTTCTCG 521
Query 540 GTGGTGTTCGACTCAGTGAAAGCTCCAGGTTTAGGATTAGGCGCGAGATACATATTCACG 599
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTAGCATTCGACTCAGTGAAAGCTCCAGGTTTAGGATTAGGCGCGAGATACATATTCACG 581
Query 600 ATGGGAGTTGGACGTCTTTTAAGAGCTATAACCTTTGTATCAACTATATTACCTTCAGCT 659
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 582 ATGGGAGTTGGACGTCTTTTAAGAGCTATTACCTTTGTATCTACTATATTACCTTCAGCT 641
Query 660 AGACCTTGGTGTGCTTCAGCCCGGTTTAACAATGTACCTTCTCAGCCTCATCGTTGGGCT 719
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 642 AGACCTTGGTGTGCTTCAGCCCGGTTCAACAGTGTACCTTCTCATCCTCATCGTTGGGCT 701
Query 720 CAGAAATATTATGTCCCTTATGCTAATGATCCTGCTGCAATTAGAAAGCTCCTTCATTGG 779
||||||||||||||||| ||||||||||| |||||||| || ||| ||||||||||||||
Sbjct 702 CAGAAATATTATGTCCCCTATGCTAATGACCCTGCTGCTATAAGACAGCTCCTTCATTGG 761
Query 780 GATGCAGCTTATGCTGATCCAGGAAGTTACATTGGTGACTATAGAGCTGATTGGGGTTCA 839
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 762 GATGCAGCTTACGCTGATCCAGGAAGATACATTGGTGACTATAGAGCTGATTGGGGTTCA 821
Query 840 ATGAGCTTCCTTAGTGAGTTCTTGAGACCGAGTTACTCTGAAGGGTCTTCTTGGTTTGCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ATGAGCTTCCTTAGTGAGTTCTTGAGACCGAGTTACTCTGAAGGGTCTTCTTGGTTTGCT 881
Query 900 CTATTAAAGAAAGCCGGAGGTGGTTGTAATGATCTCATGTATAGTGGTCATATGCTTGTA 959
|| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 CTGCTAAAGAAAGCTGGAGGTGGTTGTAATGATCTCATGTACAGTGGTCATATGCTTGTA 941
Query 960 GCTGTCTTAACCGCTATGGCTTGGACGGAGGCTTATGGAGGTTTCTCTTCTGCAATGATA 1019
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GCTGTCCTAACCGCAATGGCTTGGACGGAGGCTTATGGAGGTTTCTCTTCTGCAATGATA 1001
Query 1020 TGGTTGTTCGTGGCACACAGCGCACAGAGAGAAATACGAGAGCGACACCATTACACAGTA 1079
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1002 TGGTTGTTCGTGGCACACAGCGCACAGAGAGAAATACGAGAGCGCCACCATTACACGGTA 1061
Query 1080 GACTGTATTGTGGCGATATATGTTGGTATCCTTCTCTGGAAAATGACGGGTTTTATCTGG 1139
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1062 GACTGCATTGTGGCGATTTATGTTGGTATCCTTCTCTGGAAAATGACAGGTTTCATTTGG 1121
Query 1140 TCAGCCGAGAGAAAAACGAAGCAGACGAAACTAGAGAAGATTCAGAATAGTCTGATTCAC 1199
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1122 TCAGCCGAGAGAAAAACAAAGCAGACGAAACTAGAGAAGATTCAGAACAGTCTGATTCAC 1181
Query 1200 GCTGCAAAGGATGGAGACATAGAGACTGTAAGGAGACTTGTGGAGGAGATAGAGGTAAGC 1259
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GCTGCAAAGGATGGGGACATGGAGACTGTAAGGAGACTTGTGGAGGAGATAGAGGTAAGC 1241
Query 1260 TC-TAGGGTGGAGAAGCAGAGTAAAGTCATCTCGAACCGGACAATGACTGTGTTTGCGTG 1318
|| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1242 TCCT-GGGTGGAGAAGCAGAGTAATGTCATCTCGAACCGAACAATGACTGTGTTTGCGTG 1300
Query 1319 TGCCACAGTGATCACAACACTCACTATAGTGATTCTGGCATTGACTTTGACAAGCGACGG 1378
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1301 TGCCACAGTGATCACAACACTTACTATAGTGATTCTGGCGTTGACTTTGACAAGCGACGG 1360
Query 1379 CTAAAAGAGAC 1389
|||||||||||
Sbjct 1361 CTAAAAGAGAC 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5