BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43610.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473765 jgi|Araly1|473765|fgenesh2_kg.1__3719__AT1G43600.1 776 0.0
> Ahg473765 jgi|Araly1|473765|fgenesh2_kg.1__3719__AT1G43600.1
Length=633
Score = 776 bits (420), Expect = 0.0
Identities = 549/610 (90%), Gaps = 13/610 (2%)
Strand=Plus/Plus
Query 147 GAAGAAGAAGCTTCACTTAGTCCTTGACTTAGACCACACGCTACTCCACTCTGTTCTGGT 206
|||||||||||||||| ||||||||||||| |||||||||||| ||||| | ||||| ||
Sbjct 3 GAAGAAGAAGCTTCACCTAGTCCTTGACTTGGACCACACGCTAATCCACACGGTTCTTGT 62
Query 207 TTCAGACCTATCCAAACGCGAGAAGTATCTACTCGAAGAAACTGATTCAAGGCAAGATCT 266
||| ||||| || ||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 63 TTCGGACCTTTCTGAACGCGAGAAGTATCTACTGGAAGAAGCTGATTCAAGGCAAGATCT 122
Query 267 ATGGAGACGCAACGTAGACGGT---TACGAATTTATCATAAAGCTACGACCTTTTCTTCA 323
||||||| |||| |||| || |||||||||||||||||||||||||||||| ||||
Sbjct 123 ATGGAGATTCAACAAAGACAGTCCCTACGAATTTATCATAAAGCTACGACCTTTTGTTCA 182
Query 324 TGAGTTTCTCTTAGAAGCCAATAAGCTCTTCACAATGCACGTTTACACAATGGGTAGTT- 382
||| |||||||||||||| || ||||| |||||||||||||||||||||||||||| ||
Sbjct 183 TGAATTTCTCTTAGAAGCTAACAAGCTATTCACAATGCACGTTTACACAATGGGTAATTC 242
Query 383 CTAGTTACGCAAAGCAGGTGTTGAAGCTGATTGATCCTGATAAAGTATACTTTGGGAAA- 441
|| ||||||| || | ||||||||| |||||||||| ||||||||||||||| |||||
Sbjct 243 CT-GTTACGCTCAGGATGTGTTGAAGTTGATTGATCCGGATAAAGTATACTTT-GGAAAT 300
Query 442 CGAGTTATAACTAGAGAAGCAAGTCCTTTTAATAAGTCACTTGATCTTCTTGCGGCTGAT 501
||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||
Sbjct 301 CGAGTTATAACCAGAGAAGCAAGTCCTTGTAATAAGACACTTGATCTTCTTGTGGCTGAT 360
Query 502 AAACGTAGAGTGGTCATTGTGGATGATACG-GTTCATGTTTGGCCTTTTCACAAGAGAAA 560
| |||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 361 ACACGTAGAGTGGTAATTGTGGATGATACGATTTC-TGTTTGGCCTCATCACAAGAGAAA 419
Query 561 CTTGTTGCAGATCACCAAATACATTTATTTTAAAGTCGATGGAACCAAGTGGGATTCGTA 620
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 420 CTTGTTGCAGATCACCAAATACATCTATTTTAGAGTCGATGGTACCAAGTGGGATTCGTA 479
Query 621 CGCAGAAGCA-AAGAAAGATGAGAGTC-AAAGCAATGGATCATTGGCCAATGTTCTGAAA 678
|||||||| | |||||||| ||||||| |||| | |||||||||||| |||||||||||
Sbjct 480 CGCAGAAG-AGAAGAAAGACGAGAGTCGAAAG-AGTGGATCATTGGCGAATGTTCTGAAG 537
Query 679 TTCCTTGAAGTTGTTCACAAAAGATTTGAAGAGGATTTAGGTTTTAAAGATTTGAGGCTA 738
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 538 TTCCTTGAAGATGTTCACAAAAGATTTGAAGAGGATTTAGATTCTAAAGATTTGAGGCTA 597
Query 739 TTGATACCTT 748
||||||||||
Sbjct 598 TTGATACCTT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5