BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G43620.1
Length=2516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473768 jgi|Araly1|473768|fgenesh2_kg.1__3722__AT1G43620.1 3557 0.0
> Ahg473768 jgi|Araly1|473768|fgenesh2_kg.1__3722__AT1G43620.1
Length=2442
Score = 3557 bits (1926), Expect = 0.0
Identities = 2313/2488 (93%), Gaps = 74/2488 (3%)
Strand=Plus/Plus
Query 2 ATTATTAATAAATATCTCATCGGCGGTCTCACCACATTTGGTTGATTCAAAAGTCTCCAA 61
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATTATTAATAAATATCTCATCGGCGGTCTCACCACATTTGGTTGATTCAACAGTCTCCAA 60
Query 62 ACCCTTTGGAATC-T-TCAAGTTGTTCTTCATCAATTCCACAAACCCAGAAACAATCTTT 119
||||||||||||| | ||||||| ||||||||||||| | | | | | |||||||
Sbjct 61 ACCCTTTGGAATCTTCTCAAGTTTTTCTTCATCAATT-C-C--A--C----A-AATCTTT 109
Query 120 -CTTCCACAGAGATAACCCACTAATCAATTTCTCTCCTTTTCCAATTC----ACTCAGTG 174
||||||||||||| | | || ||||| ||||||||||| ||||||||
Sbjct 110 GCTTCCACAGAGAT-----A-T--TC----TCTCT--TTTTCCAATTCTTGAACTCAGTG 155
Query 175 CAGCTAACTTTCTGTACCT-AAGGATTTGACTGGTTGTTGCTTCAAGCTTTGATTCGTCT 233
|||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||
Sbjct 156 CAGCTAACTTTCTGCACCTAAAGGA-TTGACTGGTCGTTGCTTCAAGCTTTGATTCGTCT 214
Query 234 GTGTACAGCATTTGCCAGGAGAGCCATTAGCATCACTATGGTTGAATAAATGTATAAGAA 293
|||| ||||||||||||||||||||||||||||| ||| || | | | |||
Sbjct 215 GTGTTCAGCATTTGCCAGGAGAGCCATTAGCATCTCTA----TG-----A--T-T--GAA 260
Query 294 TAGTGAAATTCTT-TGAGTGTGTATAGATGTTCTTTTGTGGAGTTTGATCCATATGTAGG 352
||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 261 TAGTGAAATTCTTGTGAGTGTGTATGGATGTTCCTTTGTGGAGTTTGATCCATATGTAGG 320
Query 353 TGGTTTGTTGCTGCAGCTGATTGTGTGGGT-TTAGGCAGTGAGAGCTGTTTAGTTGAAT- 410
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 321 TGGTTTGTTGCTGCAGCTGATTGTGTGGGTATTAGGCAGTGAGAGCTGTTTAGTT--ATG 378
Query 411 TC-AGTTTTTAAAGGTGAT-GGCTAGTA-ATGTATT---TGAT--CATCCACT-TC--AA 459
| || | || | |||| | | || | ||| ||| ||| | || ||
Sbjct 379 GCGAG-TAATATATTTGATCATCCACTACAAAAATTAGAGGATGGGATCGGGTCTCGAAA 437
Query 460 GAATTA-GAGGGTGAAGATAATGGTGTAAAGAGCGAGAAAGCGAGTTTATTGGAAACATC 518
| || | | ||||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 438 GGATGATTCTGATGAAGATAACGCTGTAAATAGCGAGAAGGCGAGTTTATTGGAAACATC 497
Query 519 TGGTTCTGTAGATACTACTCCTGAGGATTCTGGTCATCGTTCTTCTGATGGGCATAGGGG 578
|||||||||||||||||||||||| ||||||||| ||||||||||||| ||| ||||||
Sbjct 498 TGGTTCTGTAGATACTACTCCTGAAGATTCTGGTTGTCGTTCTTCTGATTGGCGTAGGGG 557
Query 579 ACTAGACCACTGTGAAACTGCACCTGTTGGTCTCTATGGAGATATGCTTATCAATGACAG 638
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 558 ACTAGACCACTGTGAAACTGCACCTGTTGGTCTCTGTGAAGATATGCTTATCGATGACAG 617
Query 639 TGAGATTCAGTACTCTCGGTCCTTGACAGAGAAAGGGTCTCCTGCGATTCATAATCTTAA 698
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 618 TGAGATTCAGTACTCTCGGTCCTTGACAGAGAAAGGGTCTCCTGCAAATCATAATCTAAA 677
Query 699 ATTAGATAGATTGTCGGAGCAAGAAAAGCAAAAACTCATTGTTGAGCTAGTCAGAATACA 758
||| |||||||| ||||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct 678 ATTGGATAGATTATCGGAGCGGGAAAAGCAAAAACTCATTGTCGAGTTAGTCAGAATACA 737
Query 759 AAATGACGGGACAGTGGAAGTTATAGATAACGGTACTCCGGTGTCGGAGTTATGGGAGTT 818
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 738 AAATGACGGGACAGTGGAAGTTATAGATAACGGAACTCCGGTATCGGAGTTATGGGAGTT 797
Query 819 TGAGCCAACGAAAGGGCAGTCCACAATCACATATGAAAAGTCCTTAACTGAGTCCTTTAG 878
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 798 TGAGCCAACGAAAGGGCAGTCCACAATCACATATGAAATGTCCTTTACTGAGTCCTTTAG 857
Query 879 ATCCATTCCAAGGTTAAAAATTGCTATACTTGTGGTTGGAACTCGAGGCGATGTGCAGCC 938
||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 858 ATCCATTCCAAGGTTAAAAATTGCTATACTTGTCGTTGGAACTAGAGGTGATGTGCAGCC 917
Query 939 TTTTCTGGCCATGGCAAAGCGCCTCCAGGAGTTTGGTCATCGTGTTAGGTTGGCAACTCA 998
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 918 TTTTTTGGCCATGGCAAAGCGCCTCCAGGAATTTGGTCATCGTGTTAGGTTGGCAACTCA 977
Query 999 TGCAAATTTCCGCTCTTTTGTACGGGCTGCTGGAGTAGAGTTTTATCCCTTGGGCGGTGA 1058
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 TGCAAATTTCCGCTCTTTTGTACGGGCTGCTGGAGTAGAGTTTTATCCCTTGGGTGGTGA 1037
Query 1059 TCCCCGAGAGTTAGCTGCCTATATGGCTAGAAATAAAGGTCTCATTCCCTCTGGGCCTTC 1118
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1038 TCCCCGAGAGTTAGCTGCATATATGGCTAGAAATAAAGGTCTCATTCCTTCTGGGCCTTC 1097
Query 1119 AGAAATATCAAAACAGAGAAAACAGTTGAAGGCAATTATAGAGTCTCTTCTTCCGGCATG 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AGAAATATCAAAACAGAGAAAACAGTTGAAGGCAATTATAGAGTCTCTTCTTCCGGCATG 1157
Query 1179 CATAGAGCCTGATTTGGAAACTGCTACGTCTTTCAGAGCTCAAGCGATAATTGCAAATCC 1238
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1158 CATAGAGCCTGATATGGAAACTGCTACCTCTTTCAGAGCTCAAGCGATAATTGCAAATCC 1217
Query 1239 TCCTGCATATGGACATGTGCATGTTGCTGAAGCTCTTGGAGTACCAATTCATAttttttt 1298
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1218 TCCTGCCTATGGACATGTGCATGTTGCCGAAGCTCTTGGAGTACCAATTCACATTTTTTT 1277
Query 1299 CACAATGCCTTGGACGCCAACCAATGAATTTCCCCACCCGTTGGCGCGTGTTCCTCAAAG 1358
|||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||
Sbjct 1278 CACAATGCCTTGGACGCCAACCCATGAATTTCCACACCCTTTGGCACGTGTTCCTCAAAG 1337
Query 1359 TGCTGCATATTGGCTGTCATATATAGTTGTTGATCTGATGGTATGGTGGAGCATAAGGAC 1418
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 TGCTGCGTATTGGCTATCGTATATAGTTGTTGATCTGATGGTATGGTGGAGCATAAGGAC 1397
Query 1419 ATATATAAATGATTTTAGGAAGAGAAAGCTAAACCTTGCACCTATCGCATATTTTAGCAC 1478
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1398 ATATATAAATGATTTTAGGAAGAGGAAGCTAAACCTTGCACCTATCGCATATTTTAGCAC 1457
Query 1479 ATACCATGGCTCAATTTCGCACTTGCCTACTGGTTACATGTGGAGTCCCCATGTTGTGCC 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATACCATGGCTCAATTTCGCACTTGCCTACTGGTTACATGTGGAGTCCCCATGTTGTGCC 1517
Query 1539 AAAACCAAGTGATTGGGGTCCTTTAGTTGATGTTGTTGGCTACTGTTTCCTGAACCTTGG 1598
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1518 AAAACCAAGTGATTGGGGTCCTTTAGTTGATGTTGTTGGCTATTGTTTCCTGAACCTTGG 1577
Query 1599 ATCGAAGTACCAGCCTCGCGAAGAGTTTCTCCACTGGATAGAAAGAGGATCACCGCCCGT 1658
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1578 ATCAAAGTACCAGCCTCGCGAAGAGTTTCTCCACTGGATAGAAAGAGGATCACCGCCCAT 1637
Query 1659 ATATATTGGTTTTGGAAGCATGCCTCTTGATGATCCAAA-ACAAACAATGGACATTATAC 1717
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1638 ATATATTGGTTTTGGAAGCATGCCTCTTGATGATCCAAAGA-AAACAATGGACATTATAT 1696
Query 1718 TGGAAACATTGAAAGATACAGAACAGAGAGGGATAGTTGATCGAGGTTGGGGTGGCCTTG 1777
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TGGAAACACTGAGAGATACAGAACAGAGAGGGATAGTTGATCGAGGTTGGGGTGGCCTTG 1756
Query 1778 GAAACCTTGCTACTGAAGTTCCTGAAAATGTATTCTTAGTGGAGGACTGTCCTCACGATT 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 GAAACCTTGCTACTGAAGTTCCTGAAAATGTATTCTTAGTGGAGGACTGTCCTCACGATT 1816
Query 1838 GGTTGTTTCCTCAATGTTCAGCTGTGGTTCATCATGGCGGTGCTGGAACCACAGCGACTG 1897
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1817 GGTTGTTTCCTCAGTGTTCAGCTGTGGTTCATCATGGCGGTGCTGGAACCACAGCGACTG 1876
Query 1898 GACTAAAAGCTGGGTGTCCAACAACGATCGTGCCATTCTTTGGGGATCAGTTCTTCTGGG 1957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1877 GACTAAAAGCTGGGTGTCCAACAACGATCGTGCCATTCTTTGGGGATCAATTCTTCTGGG 1936
Query 1958 GTGACAGGATCTATGAGAAAGGACTTGGGCCTGCGCCAATACCGATAGCTCAGCTCAGTG 2017
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1937 GTGACAGGATCTATGAGAAAGGACTTGGTCCTGCGCCAATACCGATAGCTCAGCTCAGTG 1996
Query 2018 TTGAGAACCTCAGTAGCTCCATAAGATTCATGCTACAACCAGAGGTGAAATCACAAGTGA 2077
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1997 TTGAGAACCTCAGTAGTTCCATAAGATTCATGCTACAACCAGAGGTAAAATCACAAGTGA 2056
Query 2078 TGGAGCTAGCGAAAGTACTGGAGAACGAGGATGGTGTAGCTGCAGCAGTTGATGCATTCC 2137
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2057 TGGAACTAGCGAAAGTACTGGAGAACGAGGATGGTGTAGCTGCAGCAGTTAATGCATTCC 2116
Query 2138 ACAGGCATTTGCCACCAGAGCTGCCACTGCCCGAGTCCTCGTCCGAGAAAAAAGATGAAG 2197
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2117 ACAGGCATTTGCCACCAGAGCTGCCACTGCCCGAGTCCTCGTCTGAGAAAAAGGATGAAG 2176
Query 2198 ATGATCGACCAGACCTGTTACAGTGGTTCTTTATTCAGATTGGCAAGAAGTGTTGTCTTC 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2177 ATGATCGACCAGACCTGTTACAGTGGTTCTTTATTCAGATTGGCAAGAAGTGTTGCCTTC 2236
Query 2258 CATGTGGTGGCGTGTGATATCAAAGTTCCTTAGTCGTGTGTTTAAGTTGCATAATCTATG 2317
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||
Sbjct 2237 CATGTGGTGGCGTGTGATATCAAATTTCCTTAGTTGTGT-TTTAAGTTGCATAATCTTTG 2295
Query 2318 TCTCTGCAACTCAATTCATTTCATTCAATGGTCAGGAATAT-A--ATTAGATTTCTTTTG 2374
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2296 TCTCTGCAACTCAATTCATTTCATTCAATGGTCAGGAATATGATGATTAGATTTCTTTTG 2355
Query 2375 CACAGTTGCATAAAATGGATGTAATAAAATTATTGT-TATGGGTTTGTTCATCTTTATAA 2433
|||||||||||||| ||||| ||||||||||||||| | |||||||||||||| ||||||
Sbjct 2356 CACAGTTGCATAAAGTGGATTTAATAAAATTATTGTGT-TGGGTTTGTTCATCCTTATAA 2414
Query 2434 GTTTGTGGTCCAATGAGAATGACTTTGA 2461
|||||||||||||||||||||| |||||
Sbjct 2415 GTTTGTGGTCCAATGAGAATGAGTTTGA 2442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94844710050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5